Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1628
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    32   0.075
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    28   1.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    27   2.8  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    27   3.7  
SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyce...    26   6.5  

>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 32.3 bits (70), Expect = 0.075
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 329 YGVFTMSME*LCSTCSKNRLIFFMKC 252
           +GVFT+  E   STCS+NRL + + C
Sbjct: 368 HGVFTLLTECYSSTCSRNRLCYSISC 393


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 95   DEVLVPKANVCFCCLTDGKTLIEFRLCKHRIFLENHFKEKLNIQNLFVCVKCHIS 259
            DE+ +P++  C   L +        + +H+ F     KE + I+N+FVC  C+ S
Sbjct: 2589 DEINLPRSRNC---LAEDVICFLRHMLEHQGFWHPLHKEWVTIKNIFVCGACNPS 2640


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -3

Query: 170 IEIQLMFYRQLSNKNKHLLSAQELRH 93
           I +QL F ++L+ ++KHL+   +  H
Sbjct: 21  IRVQLEFKKELAQRSKHLMDVSQCEH 46


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1323

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 104  LVPKANVCFCCLTDGKTLIEFRLCKHRIFLENHFKE 211
            LVP+ +  FCCL+     I   LC H +  E+ +KE
Sbjct: 1259 LVPRMSCTFCCLSIHGLCIVCGLCLH-VMHEDCYKE 1293


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +3

Query: 504 GKLQSLNEPLQADHPEEIKVCEGIEDCFGAKL-KTTYLSRT-ELEAERELAKRKANTQRN 677
           G+L++    + A   + I VC G     GA + ++ +     ELE  + +   +A   R+
Sbjct: 276 GRLRAAKNLISAGI-DSIIVCGGDGSLTGADIFRSDWPGLVKELEDTKAITPEQAKLYRH 334

Query: 678 CTNVKMCGSYDNDL 719
            T V + GS DND+
Sbjct: 335 LTIVGLVGSIDNDM 348


>SPBC11G11.03 |||60S acidic ribosomal protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 315 HEHGVALFHLLQKQIDLFHEMWHLTHTN 232
           HE   ALF  +Q+ +D F  MW    TN
Sbjct: 20  HEGKAALFSGVQQSLDSFDYMWIFDVTN 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,155
Number of Sequences: 5004
Number of extensions: 48311
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)