Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1628
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694...    32   0.55 
08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786...    31   1.3  

>03_05_0882 +
           28467691-28467730,28468386-28468675,28469262-28469411,
           28470126-28470214,28470331-28470440,28470545-28470639,
           28471110-28471162,28471374-28471539,28471909-28472001,
           28472304-28472432,28472549-28472668,28472862-28472942,
           28473495-28473602,28473895-28474038,28474120-28474218,
           28474300-28474379,28474830-28474922,28475197-28475320
          Length = 687

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 26/82 (31%), Positives = 42/82 (51%)
 Frame = +1

Query: 283 EQVEQSYSMLMVKTPYNNVNMTMNLVRSKIEVISTLNDVNEIKIEPLTARIENESKIEIK 462
           E++ +  ++L+ K       +T   ++ KI   S L +  E KI  LTA+ E + K+ +K
Sbjct: 381 EEMSKLEALLLDKNRKMEHELTQ--LKVKISEKSNLLEEAEKKIAELTAKAEEQQKLILK 438

Query: 463 LEDAHNISKADISTANYRVLMN 528
           LED  +I K   ST     L+N
Sbjct: 439 LED--DILKGYSSTDRRTSLLN 458


>08_02_1041 -
           23876849-23876959,23877853-23878046,23878621-23878691,
           23878956-23879009,23879051-23879187
          Length = 188

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +1

Query: 340 NMTMNLVRSKIEVISTLNDVNEIKIEPLTARIENES-KIEIKLEDAH-NISKA-DISTAN 510
           N  +  V  KIE I+ + D +  K+E +T +IEN S KI+ K+E     I K  + ST+N
Sbjct: 122 NGCLQKVVEKIEYIAEVVDEDAEKVEAITEKIENFSDKIDAKVEPIFTEIEKEFEDSTSN 181

Query: 511 YRVLMNL 531
             V  N+
Sbjct: 182 DGVNANI 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,363
Number of Sequences: 37544
Number of extensions: 254738
Number of successful extensions: 644
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)