Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1628
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)                    34   0.14 
SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_34122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)          29   4.0  
SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)       29   4.0  
SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)                 28   9.1  
SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)                       28   9.1  

>SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)
          Length = 290

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
 Frame = +1

Query: 271 NLFLEQVE--QSYSMLMVKTPYNNVNMTMNLVRSKIEVISTLNDVNEIKIEPLTARIENE 444
           +LF+ ++   QS S+  V+  YN    T++L   K++V +  N V    + PL+  + N+
Sbjct: 48  DLFISEITDAQSGSLTYVEI-YNGTGATVDLSNYKLKVHTNGNPVANCNL-PLSGMLVND 105

Query: 445 SKIEIKLEDAHNIS 486
             + IKL ++ NIS
Sbjct: 106 DVVVIKLSNSANIS 119


>SB_15342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1434

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/44 (34%), Positives = 29/44 (65%)
 Frame = +1

Query: 364 SKIEVISTLNDVNEIKIEPLTARIENESKIEIKLEDAHNISKAD 495
           +KIE+I+ L +VN+ K++  T R+ +++     + DAH++S  D
Sbjct: 809 NKIELITYLEEVNDRKVDDDTFRVASDA-----IGDAHSVSHID 847


>SB_34122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 303

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 2/35 (5%)
 Frame = +1

Query: 391 NDVNE-IKIEPLTARIENESKIEIKLED-AHNISK 489
           ND+++ +++EPL  R+EN   + IKL D  H ++K
Sbjct: 257 NDLSQALRLEPLVPRVENIRAMTIKLTDNEHQLAK 291


>SB_48704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 321 LYHEH-GVALFHLLQKQIDLFHEMWHLTHTN 232
           LYH+H G  L  L +K+++ FH +    H N
Sbjct: 387 LYHKHQGTILSALTEKKVETFHSLLRRLHNN 417


>SB_31927| Best HMM Match : Ldl_recept_a (HMM E-Value=2.3e-27)
          Length = 157

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +3

Query: 501 YGKLQSLNEPLQADHPEEIKVCEGIEDCFGAKLKT 605
           YGK ++LN+ L+ D P+EIK    +++ FG +++T
Sbjct: 80  YGK-RALNKKLKLDEPDEIKT---LDERFGVRVRT 110


>SB_23898| Best HMM Match : Ldl_recept_a (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/35 (40%), Positives = 25/35 (71%)
 Frame = +3

Query: 501 YGKLQSLNEPLQADHPEEIKVCEGIEDCFGAKLKT 605
           YGK ++LN+ L+ D P+EIK    +++ FG +++T
Sbjct: 214 YGK-RALNKKLKLDEPDEIKT---LDERFGVRVRT 244


>SB_53865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 516 SLNEPLQADHPEEIKV--CEGIEDCFGAKLKTTYLSRTELEAERELAKRKANTQRNCTNV 689
           +LN+P+Q     + K    + IED F   L   Y   TELE +REL K+   T     N+
Sbjct: 762 TLNKPIQIPDLSDTKAEFVQRIEDVF-RDLTAKY---TELETQRELLKKSVETFEEEKNI 817

Query: 690 KM 695
            +
Sbjct: 818 NI 819


>SB_12882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 689 HICAISLCICFAFC*LSLGFKFCP*EVC 606
           H+  +S C+C   C   +    CP  VC
Sbjct: 72  HVVTVSYCVCIVLCPSRVCIVLCPSRVC 99


>SB_17763| Best HMM Match : IBN_N (HMM E-Value=3.4e-20)
          Length = 681

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +1

Query: 232 ICVCQMPHFMKKINLFLEQVEQSYSMLMVKTPYNNVNMTMNLVRSKIE 375
           I +   PHF K +++ +  + Q+  + +VKT Y+ ++    L  S +E
Sbjct: 615 IALATGPHFKKYLDVVIATLTQATQVQVVKTDYDMIDYLNELRESCLE 662


>SB_17340| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 890

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 642 LSRLQVLSVRGMLSLVWLRSSPQYLH 565
           L+ L VLS++ +L+ VW+   P Y+H
Sbjct: 721 LALLAVLSIQVLLAAVWIVFDPPYVH 746


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,846,786
Number of Sequences: 59808
Number of extensions: 331575
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)