Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1628
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical ... 31 0.65
AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical ... 31 0.65
Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical p... 30 2.0
AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical ... 30 2.0
U23517-2|AAB93337.1| 243|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 29 4.6
AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical ... 29 4.6
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 29 4.6
Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical pr... 28 8.0
>AC006631-1|AAF39793.2| 787|Caenorhabditis elegans Hypothetical
protein F27B3.5 protein.
Length = 787
Score = 31.5 bits (68), Expect = 0.65
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 211 KVEYTKSICV-CQ-MPHFMKKINLFLEQVEQSYSMLMVKTPYNNVNMTMNLVRSKIEVIS 384
KVE + + C C + MK + L+ V+ + + K+ NMT ++ RSK
Sbjct: 402 KVESSMANCTDCSGVRKEMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSK----K 457
Query: 385 TLNDVNEIKIEPLTARIENESKIEIKLEDAHNISK 489
+ E K++ + ++E + K+E+KLE+ K
Sbjct: 458 AEQRLQEEKLDHVKIQVEAKKKLELKLEEVETWKK 492
>AC006607-9|AAF60368.2| 995|Caenorhabditis elegans Hypothetical
protein C09E7.7 protein.
Length = 995
Score = 31.5 bits (68), Expect = 0.65
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 211 KVEYTKSICV-CQ-MPHFMKKINLFLEQVEQSYSMLMVKTPYNNVNMTMNLVRSKIEVIS 384
KVE + + C C + MK + L+ V+ + + K+ NMT ++ RSK
Sbjct: 609 KVESSMANCTDCSGVRKEMKTVQNVLKDVQTQLTTMKHKSEKFEKNMTGSVERSK----K 664
Query: 385 TLNDVNEIKIEPLTARIENESKIEIKLEDAHNISK 489
+ E K++ + ++E + K+E+KLE+ K
Sbjct: 665 AEQRLQEEKLDHVKIQVEAKKKLELKLEEVETWKK 699
>Z81529-12|CAB04303.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 170 LCKHRI----FLENHFKEKLNIQNLFVCVKCHIS 259
LC RI L H K K NI LF+CV C+ S
Sbjct: 43 LCNRRIPENETLREHMKNKHNIWKLFICVCCNWS 76
>AL023816-5|CAA19434.1| 492|Caenorhabditis elegans Hypothetical
protein T05G11.1 protein.
Length = 492
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = +2
Query: 170 LCKHRI----FLENHFKEKLNIQNLFVCVKCHIS 259
LC RI L H K K NI LF+CV C+ S
Sbjct: 43 LCNRRIPENETLREHMKNKHNIWKLFICVCCNWS 76
>U23517-2|AAB93337.1| 243|Caenorhabditis elegans Hypothetical
protein D1022.4 protein.
Length = 243
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -2
Query: 336 IVIWSLYHEHGVALFHLLQKQIDLFHE 256
IV ++Y HG A FH+ + Q+D FHE
Sbjct: 161 IVGTTVYVHHGDADFHIAKDQVDGFHE 187
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 582 CFGAKLKTTYLSRTELEAERELAKRKANTQRNCTNVKMCGSYDNDLHLRIIAL 740
CF YL+R +++A ++ + + C N+ G DL +RI ++
Sbjct: 313 CFALSATAAYLNRQDVQAALHVSVNASTNFQTCRNLTY-GELSTDLQIRISSI 364
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 582 CFGAKLKTTYLSRTELEAERELAKRKANTQRNCTNVKMCGSYDNDLHLRIIAL 740
CF YL+R +++A ++ + + C N+ G DL +RI ++
Sbjct: 313 CFALSATAAYLNRQDVQAALHVSVNASTNFQTCRNLTY-GELSTDLQIRISSI 364
>AL033508-1|CAA22058.2| 821|Caenorhabditis elegans Hypothetical
protein Y106G6G.2 protein.
Length = 821
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = -2
Query: 681 CNFAVYLLCVLLALSRLQVLSVRGMLSLVWLRSSPQYLHIL 559
C ++ +C LL S L++LS + ++L+W + P + +L
Sbjct: 208 CLISLDAICALLTTSNLKILSHQPFVNLLWEKVCPLIILLL 248
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +3
Query: 582 CFGAKLKTTYLSRTELEAERELAKRKANTQRNCTNVKMCGSYDNDLHLRIIAL 740
CF YL+R +++A ++ + + C N+ G DL +RI ++
Sbjct: 313 CFALSATAAYLNRQDVQAALHVSVNASTNFQTCRNLTY-GELSTDLQIRISSI 364
>Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical
protein AH10.3 protein.
Length = 282
Score = 27.9 bits (59), Expect = 8.0
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Frame = -2
Query: 693 FSHLCNFAV-YLLCV------LLALSRLQVLSVRGMLSLVWLRSSPQYLHILLFLQ 547
F+ L NF + Y+LC ++ +S+++ L + + SL W PQ+ I F Q
Sbjct: 136 FARLSNFPIGYILCQHCVCCSIITISKVEPLIKKFLQSLFWSPPPPQFTSISTFKQ 191
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,378,539
Number of Sequences: 27780
Number of extensions: 270477
Number of successful extensions: 869
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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