Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1628
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein ...    31   0.61 
At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing pro...    31   0.80 
At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR ...    29   3.2  
At4g10560.1 68417.m01729 DC1 domain-containing protein contains ...    29   4.3  
At5g23770.1 68418.m02791 agenet domain-containing protein contai...    28   7.5  
At2g06140.1 68415.m00675 hypothetical protein                          28   7.5  
At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR ...    28   7.5  

>At3g56930.1 68416.m06332 zinc finger (DHHC type) family protein low
           similarity to Golgi-specific DHHC zinc figer protein
           [Mus musculus] GI:21728103; contains Pfam profile
           PF01529: DHHC zinc finger domain
          Length = 477

 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/49 (30%), Positives = 30/49 (61%)
 Frame = +1

Query: 232 ICVCQMPHFMKKINLFLEQVEQSYSMLMVKTPYNNVNMTMNLVRSKIEV 378
           I + ++P  M K   F++  E+ Y M+MV+TP +N+  ++   + KI++
Sbjct: 291 IFLSKIPPSMNKFRSFVK--EEDYMMMMVETPTSNLGESLVSSKEKIDI 337


>At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing
           protein similar to SP|Q12149 Exosome complex exonuclease
           RRP6 (EC 3.1.13.-) (Ribosomal RNA processing protein 6)
           {Saccharomyces cerevisiae}
          Length = 880

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 92  DDEVLVPKANVCFCCLTDGKTLIEFRLCK--HRIFLENHFKEKLNIQNLFVCVKCH 253
           +D  +  K N+C  C  +GK  + +R+    +R+    H K   +   + +CV CH
Sbjct: 560 NDFYIQTKRNICVGC-GEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCH 614


>At1g61310.1 68414.m06910 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 925

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 642 LSRLQVLSVRGMLSLVWLRSSPQYLHILLFLQDDRPV 532
           LSRL ++    M  L W+  +P    ++LF++D R V
Sbjct: 751 LSRLDIVKCHSMKDLTWILFAPNL--VVLFIEDSREV 785


>At4g10560.1 68417.m01729 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 703

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/36 (33%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 345 HVNIVI-WSLYHEHGVALFHLLQKQIDLFHEMWHLT 241
           H+  ++ W LY +HG + F+ L+K +D+     H+T
Sbjct: 633 HIKCLLGWDLYMKHGSSSFY-LEKTVDVLSNNHHMT 667


>At5g23770.1 68418.m02791 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 438

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/66 (24%), Positives = 31/66 (46%)
 Frame = +1

Query: 256 FMKKINLFLEQVEQSYSMLMVKTPYNNVNMTMNLVRSKIEVISTLNDVNEIKIEPLTARI 435
           F+   N F E  +  ++   VK P + +N  ++L   + +    L D  ++  E  + + 
Sbjct: 333 FISLTNSFAELEKHGFN---VKAPQSRINKLLSLRDRQSKKTEELKDAEKVTAEKESVKA 389

Query: 436 ENESKI 453
           EN+ KI
Sbjct: 390 ENKRKI 395


>At2g06140.1 68415.m00675 hypothetical protein 
          Length = 633

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 343 MTMNLVRSKIEVISTLNDVNEIKIEPLTARIENESKIEIKLEDAHNISKADISTANYR 516
           +T+   R  +E +  + D+++ K++ LT RIE    +E + ED+      D+ T  YR
Sbjct: 578 VTIESSRKNVESLDRILDLDK-KVDNLTTRIEGHEPMESEEEDSSPHVLCDVVT-TYR 633


>At1g61180.1 68414.m06894 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -2

Query: 642 LSRLQVLSVRGMLSLVWLRSSPQYLHILLFLQDDRPV 532
           LSRL+++    M  L W+  +P    ++L ++D R V
Sbjct: 738 LSRLEIMKCHSMKDLTWILFAPNL--VVLLIEDSREV 772


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,063,564
Number of Sequences: 28952
Number of extensions: 234665
Number of successful extensions: 631
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)