Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    38   0.25 
UniRef50_Q6FX55 Cluster: Similarities with sp|P36170 Saccharomyc...    35   1.8  
UniRef50_Q0AU89 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  
UniRef50_Q7RRD0 Cluster: Putative uncharacterized protein PY0080...    33   9.4  

>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 37.9 bits (84), Expect = 0.25
 Identities = 19/31 (61%), Positives = 22/31 (70%)
 Frame = -2

Query: 93  SLAAKGSTSKLTLRHSPLSFSPDLLSGSRFR 1
           SL   G +++   R  PLSFSPDLLSGSRFR
Sbjct: 380 SLKTTGHSTENEHRCCPLSFSPDLLSGSRFR 410


>UniRef50_Q6FX55 Cluster: Similarities with sp|P36170 Saccharomyces
           cerevisiae YKR102w FLO10; n=3; Candida glabrata|Rep:
           Similarities with sp|P36170 Saccharomyces cerevisiae
           YKR102w FLO10 - Candida glabrata (Yeast) (Torulopsis
           glabrata)
          Length = 715

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 17/49 (34%), Positives = 29/49 (59%)
 Frame = -2

Query: 177 EFIVFSSSRSTNGAFRYFKHRSLFSSNPSLAAKGSTSKLTLRHSPLSFS 31
           E + +SSSRS + +  Y +H S+ SS+P  +   ST  L+ +++   FS
Sbjct: 350 ETLYYSSSRSPSSSVSYSEHTSINSSSPISSITNSTPSLSSQYTSTKFS 398


>UniRef50_Q0AU89 Cluster: Putative uncharacterized protein; n=1;
           Syntrophomonas wolfei subsp. wolfei str. Goettingen|Rep:
           Putative uncharacterized protein - Syntrophomonas wolfei
           subsp. wolfei (strain Goettingen)
          Length = 336

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 23/77 (29%), Positives = 38/77 (49%)
 Frame = +2

Query: 32  EKLSGLCLRVNLLVEPFAASDGFDENSDRCLKYLKAPLVDREEENTINSHNQSLEFSFFL 211
           +++  +  + N+  +P AA  G+ E +   L+YLK  + DR   NT+ S      FS + 
Sbjct: 74  QEIEEILRQYNIGAKPLAAMLGWGEVT--ILRYLKGQIPDRAHSNTLLSLKAPYVFSRY- 130

Query: 212 FKSWQRRNNSTAQILIL 262
           FK  Q R    A+  +L
Sbjct: 131 FKQKQERLTPVARTKVL 147


>UniRef50_Q7RRD0 Cluster: Putative uncharacterized protein PY00801;
            n=8; Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein PY00801 - Plasmodium yoelii yoelii
          Length = 2340

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 68   LVEPFAASDGFDENSDRCLKYLKAP--LVDREEENTINSHNQSLEF-SFFLFKSWQRRNN 238
            LVE     +  +   D+ +     P  +VD +E + INSH+ SL F    LF+++++ N 
Sbjct: 1515 LVEDETEKEAIESCKDKIINEKSKPHFIVDNDENSYINSHSNSLSFQKINLFRNYKKYNK 1574

Query: 239  S 241
            +
Sbjct: 1575 N 1575


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 654,603,239
Number of Sequences: 1657284
Number of extensions: 12284208
Number of successful extensions: 27274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27265
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)