Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.02c |sec61||translocon alpha subunit Sec61|Schizosacchar...    28   1.2  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    27   2.7  
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom...    26   6.2  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   8.2  

>SPBC354.02c |sec61||translocon alpha subunit
           Sec61|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 479

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 481 IQREYSNGASIAKFES*I-CKNCFWHSFSAT 392
           +Q+ Y  G+ I+ F + I C+N FW +FS T
Sbjct: 171 LQKGYGLGSGISLFIATINCENIFWKAFSPT 201


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 162 SSSRSTNGAFRYFKHRSLFSSNPSL 88
           S+  + +GAFR+F H  +F +N  L
Sbjct: 581 SNPNNVSGAFRFFPHTIIFRTNKEL 605


>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1375

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 113 DRCLKYLKAPLVDREEENTINSHNQSL 193
           DR +  +K PL+D+E + T + + +SL
Sbjct: 796 DRLIHLMKLPLLDQESDPTGDEYEESL 822


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 419 VFANLTFEFCY*RTVGILTLYIFVIFLFSLFSKAI 523
           +  +  F F    T+G + +YI  IFLFSLF   +
Sbjct: 51  IIGSFPFRFYGLNTIGKI-VYILQIFLFSLFGSCM 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,850,149
Number of Sequences: 5004
Number of extensions: 57381
Number of successful extensions: 129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)