BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1627 (721 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167... 29 2.8 03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232... 28 6.5 12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003 28 8.6 02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844... 28 8.6 >08_02_1567 - 27916010-27916118,27916256-27916391,27916675-27916771, 27916866-27916970,27917058-27917240,27917764-27917823, 27917909-27918096,27919234-27919294 Length = 312 Score = 29.5 bits (63), Expect = 2.8 Identities = 12/36 (33%), Positives = 17/36 (47%) Frame = +1 Query: 280 YFPSVSRLIKEIAQFLCTG*VLLSTGAIAWAKLNPW 387 YF +++ Q +CTG L+ G W NPW Sbjct: 249 YFTFKKGVVRVETQGICTGHTLMDQGLKKWNSENPW 284 >03_02_0726 + 10722759-10722857,10722969-10723058,10723141-10723245, 10723597-10723698,10724721-10724805,10725281-10725365, 10725473-10725517,10725685-10728672,10728839-10729055, 10729193-10729765 Length = 1462 Score = 28.3 bits (60), Expect = 6.5 Identities = 11/19 (57%), Positives = 13/19 (68%) Frame = +1 Query: 409 AKNSFCKFNFRILLLTHRW 465 AK + KFNF I L+ HRW Sbjct: 167 AKKAKLKFNFNIKLVNHRW 185 >12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003 Length = 603 Score = 27.9 bits (59), Expect = 8.6 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +2 Query: 65 LLVEPFAASDGFDENSDRCLKYLKA-PLVDREEENTINS--HNQS 190 L + A S GF CL YL+A P V EE+N ++S H QS Sbjct: 207 LRIMKVAESLGFHACVKSCLDYLEAVPWVGEEEDNVVSSIRHLQS 251 >02_05_0311 + 27782110-27782326,27784121-27784268,27784394-27784478, 27784555-27784650,27785666-27785731,27785900-27785998, 27786145-27786258,27786468-27786578,27786672-27786734, 27786816-27786908,27787960-27788073,27788440-27788505, 27788782-27788994,27789086-27789116,27789459-27791587 Length = 1214 Score = 27.9 bits (59), Expect = 8.6 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -2 Query: 162 SSSRSTNGAFRYFKHRSLFSS 100 ++ R TNG + KHRSL+SS Sbjct: 449 TAKRKTNGKLIHLKHRSLYSS 469 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,146,198 Number of Sequences: 37544 Number of extensions: 318187 Number of successful extensions: 587 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 578 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 587 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1874582652 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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