Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1567 - 27916010-27916118,27916256-27916391,27916675-279167...    29   2.8  
03_02_0726 + 10722759-10722857,10722969-10723058,10723141-107232...    28   6.5  
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     28   8.6  
02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844...    28   8.6  

>08_02_1567 -
           27916010-27916118,27916256-27916391,27916675-27916771,
           27916866-27916970,27917058-27917240,27917764-27917823,
           27917909-27918096,27919234-27919294
          Length = 312

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +1

Query: 280 YFPSVSRLIKEIAQFLCTG*VLLSTGAIAWAKLNPW 387
           YF     +++   Q +CTG  L+  G   W   NPW
Sbjct: 249 YFTFKKGVVRVETQGICTGHTLMDQGLKKWNSENPW 284


>03_02_0726 +
           10722759-10722857,10722969-10723058,10723141-10723245,
           10723597-10723698,10724721-10724805,10725281-10725365,
           10725473-10725517,10725685-10728672,10728839-10729055,
           10729193-10729765
          Length = 1462

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 409 AKNSFCKFNFRILLLTHRW 465
           AK +  KFNF I L+ HRW
Sbjct: 167 AKKAKLKFNFNIKLVNHRW 185


>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 65  LLVEPFAASDGFDENSDRCLKYLKA-PLVDREEENTINS--HNQS 190
           L +   A S GF      CL YL+A P V  EE+N ++S  H QS
Sbjct: 207 LRIMKVAESLGFHACVKSCLDYLEAVPWVGEEEDNVVSSIRHLQS 251


>02_05_0311 +
           27782110-27782326,27784121-27784268,27784394-27784478,
           27784555-27784650,27785666-27785731,27785900-27785998,
           27786145-27786258,27786468-27786578,27786672-27786734,
           27786816-27786908,27787960-27788073,27788440-27788505,
           27788782-27788994,27789086-27789116,27789459-27791587
          Length = 1214

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 162 SSSRSTNGAFRYFKHRSLFSS 100
           ++ R TNG   + KHRSL+SS
Sbjct: 449 TAKRKTNGKLIHLKHRSLYSS 469


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,146,198
Number of Sequences: 37544
Number of extensions: 318187
Number of successful extensions: 587
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)