Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein p...    25   1.8  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    25   3.1  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.2  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    23   7.2  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            23   9.5  
AF185643-1|AAF15578.1|  117|Anopheles gambiae Toll-related prote...    23   9.5  

>AJ439353-10|CAD27932.1| 3325|Anopheles gambiae F25C8.3 protein
            protein.
          Length = 3325

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 404  FFCNSTHGLSFAHAIAPVDSKTHPVHKNC 318
            FFC++   L     ++P+DS +H + + C
Sbjct: 2713 FFCSNVVRLVALQVVSPIDSISHGLEQIC 2741


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +2

Query: 170 INSHNQSLEFSFFLFKSWQRRNNSTAQILILIYLV 274
           I SH  S+  S+F F  W    N    +L++++++
Sbjct: 141 IESHFGSVVASYFTFLRWLFSVNIVISVLLVVFIM 175


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 119 CLKYLKAPLVDREEENTINSHNQSLEFSFFLFK-SWQRRNNSTAQIL 256
           C+K   + L+D   +N I + N  +E S++ +K  W+ +     Q+L
Sbjct: 56  CIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVQML 102


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 119 CLKYLKAPLVDREEENTINSHNQSLEFSFFLFK-SWQRRNNSTAQIL 256
           C+K   + L+D   +N I + N  +E S++ +K  W+ +     Q+L
Sbjct: 56  CIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVQML 102


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 388  VLLQKNYAKNSFCKFNFR 441
            ++L +N+ K+ +C+F F+
Sbjct: 1144 MVLSENFIKSEWCRFEFK 1161


>AF185643-1|AAF15578.1|  117|Anopheles gambiae Toll-related protein
           protein.
          Length = 117

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 6/18 (33%), Positives = 14/18 (77%)
 Frame = +1

Query: 388 VLLQKNYAKNSFCKFNFR 441
           ++L +N+ K+ +C+F F+
Sbjct: 58  MVLSENFIKSEWCRFEFK 75


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 698,214
Number of Sequences: 2352
Number of extensions: 12869
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)