Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical pr...    29   4.4  
Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guany...    28   5.8  

>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 373 KLNPWVLLQKNYAKNSFCKFNFRILLLTHRWNTHAVYFCYFFIFA 507
           +L  W LLQ+N+ K    KFNF  LL+  R +     F   +I+A
Sbjct: 267 ELGEWPLLQENWDKT---KFNFTSLLVNSRRDYGVDVFFQLYIYA 308


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 373 KLNPWVLLQKNYAKNSFCKFNFRILLLTHRWNTHAVYFCYFFIFA 507
           +L  W LLQ+N+ K    KFNF  LL+  R +     F   +I+A
Sbjct: 267 ELGEWPLLQENWDKT---KFNFTSLLVNSRRDYGVDVFFQLYIYA 308


>Z81028-3|CAB02691.1|  545|Caenorhabditis elegans Hypothetical
           protein B0365.6 protein.
          Length = 545

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +1

Query: 241 DCTNFDLNLSC*NYFPSVSRLIKEIAQFLC 330
           D  +F  N +C  Y+PS+S L K+ AQF C
Sbjct: 159 DTCSFQYNGNC--YYPSLSALPKQDAQFSC 186


>Z78012-8|CAB01418.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -3

Query: 332 VHKNCAISLISLETEGK*F*QDRLRSKFVQSNYCVSATT*TKKKRILEIDYENL*YFPPP 153
           VH+NC   + SL    K        +  VQ N         +KK +++ +YE+L Y    
Sbjct: 266 VHQNCVFQIESLHPVVK----QTEENITVQINDITEDKVSLEKKTVMDNEYESLPYVTLR 321

Query: 152 DPLTVL 135
            P+TVL
Sbjct: 322 GPITVL 327


>Z75953-6|CAB00103.2|  945|Caenorhabditis elegans Hypothetical
           protein F57F5.2 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -3

Query: 332 VHKNCAISLISLETEGK*F*QDRLRSKFVQSNYCVSATT*TKKKRILEIDYENL*YFPPP 153
           VH+NC   + SL    K        +  VQ N         +KK +++ +YE+L Y    
Sbjct: 266 VHQNCVFQIESLHPVVK----QTEENITVQINDITEDKVSLEKKTVMDNEYESLPYVTLR 321

Query: 152 DPLTVL 135
            P+TVL
Sbjct: 322 GPITVL 327


>AY275181-1|AAP32289.1|  945|Caenorhabditis elegans soluble guanylyl
           cyclase GCY-33 protein.
          Length = 945

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = -3

Query: 332 VHKNCAISLISLETEGK*F*QDRLRSKFVQSNYCVSATT*TKKKRILEIDYENL*YFPPP 153
           VH+NC   + SL    K        +  VQ N         +KK +++ +YE+L Y    
Sbjct: 266 VHQNCVFQIESLHPVVK----QTEENITVQINDITEDKVSLEKKTVMDNEYESLPYVTLR 321

Query: 152 DPLTVL 135
            P+TVL
Sbjct: 322 GPITVL 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,725,466
Number of Sequences: 27780
Number of extensions: 319649
Number of successful extensions: 710
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)