Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   6.7  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   8.9  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   8.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 119 CLKYLKAPLVDREEENTINSHNQSLEFSFFLFK-SWQRRNNSTAQIL 256
           C+K   + L+D   +N I + N  +E S++ +K  W+ +     ++L
Sbjct: 57  CIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 119 CLKYLKAPLVDREEENTINSHNQSLEFSFFLFK-SWQRRNNSTAQIL 256
           C+K   + L+D   +N I + N  +E S++ +K  W+ +     ++L
Sbjct: 57  CIKLKLSQLIDVNLKNQIMTTNLWVEQSWYDYKLRWEPKEYGGVKML 103


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 405 VFLQQYPW 382
           VF QQYPW
Sbjct: 93  VFWQQYPW 100


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 405 VFLQQYPWI 379
           +F QQYPW+
Sbjct: 100 LFWQQYPWV 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,668
Number of Sequences: 438
Number of extensions: 3895
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)