Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1627
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35560.1 68417.m05053 expressed protein                             29   3.1  
At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH...    29   4.1  
At5g52950.1 68418.m06570 expressed protein ; expression supporte...    27   9.5  
At1g36950.1 68414.m04606 zinc finger protein-related contains si...    27   9.5  

>At4g35560.1 68417.m05053 expressed protein 
          Length = 917

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 266 YLVKTIFLPFQD*LKKLHNFYVQGEFYCRL 355
           YL +  F+PFQ  LKK +N  VQ   Y +L
Sbjct: 384 YLTENSFIPFQGSLKKGNNHIVQSVKYIKL 413


>At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8)
           monovalent cation:proton antiporter family 2 (CPA2)
           member, PMID:11500563
          Length = 847

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +2

Query: 134 KAPLVDREEENTINSHNQSLEFSFFLFK-SWQRRNNSTAQILILIYLVKTIFLP 292
           K PL D      I SH   +E SF+LF  S +     T  IL+L  ++ ++ +P
Sbjct: 438 KMPLRDSIILALIMSHKGIIELSFYLFSLSLKLVTKDTFSILVLSIVLNSLLIP 491


>At5g52950.1 68418.m06570 expressed protein ; expression supported
           by MPSS
          Length = 945

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 126 FKHRSLFSSNPSLAAKGSTSKLTLRHSPLSF---SPDLLSGSR 7
           F  +  FSS  SL +    S L++  SPLSF   +P L+S  R
Sbjct: 53  FSFKFFFSSLSSLLSSSKLSSLSISSSPLSFDLPNPTLVSLKR 95


>At1g36950.1 68414.m04606 zinc finger protein-related contains
           similarity to zinc finger proteins (C3HC4-type RING
           finger)
          Length = 226

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 380 IHGYCCRKTMPKTVFAN 430
           I GYCC+K + K  FAN
Sbjct: 199 IKGYCCKKVVKKGSFAN 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,504,688
Number of Sequences: 28952
Number of extensions: 284336
Number of successful extensions: 706
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)