BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1627 (721 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g35560.1 68417.m05053 expressed protein 29 3.1 At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CH... 29 4.1 At5g52950.1 68418.m06570 expressed protein ; expression supporte... 27 9.5 At1g36950.1 68414.m04606 zinc finger protein-related contains si... 27 9.5 >At4g35560.1 68417.m05053 expressed protein Length = 917 Score = 29.1 bits (62), Expect = 3.1 Identities = 14/30 (46%), Positives = 18/30 (60%) Frame = +2 Query: 266 YLVKTIFLPFQD*LKKLHNFYVQGEFYCRL 355 YL + F+PFQ LKK +N VQ Y +L Sbjct: 384 YLTENSFIPFQGSLKKGNNHIVQSVKYIKL 413 >At2g28180.1 68415.m03422 cation/hydrogen exchanger, putative (CHX8) monovalent cation:proton antiporter family 2 (CPA2) member, PMID:11500563 Length = 847 Score = 28.7 bits (61), Expect = 4.1 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Frame = +2 Query: 134 KAPLVDREEENTINSHNQSLEFSFFLFK-SWQRRNNSTAQILILIYLVKTIFLP 292 K PL D I SH +E SF+LF S + T IL+L ++ ++ +P Sbjct: 438 KMPLRDSIILALIMSHKGIIELSFYLFSLSLKLVTKDTFSILVLSIVLNSLLIP 491 >At5g52950.1 68418.m06570 expressed protein ; expression supported by MPSS Length = 945 Score = 27.5 bits (58), Expect = 9.5 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%) Frame = -2 Query: 126 FKHRSLFSSNPSLAAKGSTSKLTLRHSPLSF---SPDLLSGSR 7 F + FSS SL + S L++ SPLSF +P L+S R Sbjct: 53 FSFKFFFSSLSSLLSSSKLSSLSISSSPLSFDLPNPTLVSLKR 95 >At1g36950.1 68414.m04606 zinc finger protein-related contains similarity to zinc finger proteins (C3HC4-type RING finger) Length = 226 Score = 27.5 bits (58), Expect = 9.5 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +2 Query: 380 IHGYCCRKTMPKTVFAN 430 I GYCC+K + K FAN Sbjct: 199 IKGYCCKKVVKKGSFAN 215 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,504,688 Number of Sequences: 28952 Number of extensions: 284336 Number of successful extensions: 706 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 680 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 706 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1565336320 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -