BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1626X (592 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical p... 31 0.61 Z93381-6|CAB07609.1| 724|Caenorhabditis elegans Hypothetical pr... 27 10.0 Z93381-5|CAB07608.2| 720|Caenorhabditis elegans Hypothetical pr... 27 10.0 Z83218-8|CAB05693.1| 724|Caenorhabditis elegans Hypothetical pr... 27 10.0 Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical pr... 27 10.0 Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical pr... 27 10.0 >Z81533-14|CAB04331.2| 707|Caenorhabditis elegans Hypothetical protein F36G9.12 protein. Length = 707 Score = 31.1 bits (67), Expect = 0.61 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +1 Query: 88 IYKFIVYLVLWGNFEII*NLIILKVNFIYCILCIR 192 + K ++ LW N E+I ++ KV FI C+ CIR Sbjct: 243 LLKILISFSLWTNAELILSVKEQKVGFIKCLDCIR 277 >Z93381-6|CAB07609.1| 724|Caenorhabditis elegans Hypothetical protein C31A11.1 protein. Length = 724 Score = 27.1 bits (57), Expect = 10.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 85 KIYKFIVYLVLWGNFEII*NLIILKVNFIYCILCIR 192 +I + ++ LW N E++ ++ K FI C+ CIR Sbjct: 232 RILQILLTFSLWTNAELLLSVKEQKPGFIKCLDCIR 267 >Z93381-5|CAB07608.2| 720|Caenorhabditis elegans Hypothetical protein F28G4.5 protein. Length = 720 Score = 27.1 bits (57), Expect = 10.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 85 KIYKFIVYLVLWGNFEII*NLIILKVNFIYCILCIR 192 +I + ++ LW N E++ ++ K FI C+ CIR Sbjct: 224 RILQILLTFSLWTNAELLLSVKEQKPGFIKCLDCIR 259 >Z83218-8|CAB05693.1| 724|Caenorhabditis elegans Hypothetical protein C31A11.1 protein. Length = 724 Score = 27.1 bits (57), Expect = 10.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 85 KIYKFIVYLVLWGNFEII*NLIILKVNFIYCILCIR 192 +I + ++ LW N E++ ++ K FI C+ CIR Sbjct: 232 RILQILLTFSLWTNAELLLSVKEQKPGFIKCLDCIR 267 >Z83218-2|CAB05687.1| 705|Caenorhabditis elegans Hypothetical protein C31A11.5 protein. Length = 705 Score = 27.1 bits (57), Expect = 10.0 Identities = 12/36 (33%), Positives = 21/36 (58%) Frame = +1 Query: 85 KIYKFIVYLVLWGNFEII*NLIILKVNFIYCILCIR 192 +I + ++ LW N E++ ++ K FI C+ CIR Sbjct: 232 RILQILLTFSLWTNAELLLSVKEQKPGFIKCLDCIR 267 >Z49887-1|CAA90058.1| 710|Caenorhabditis elegans Hypothetical protein F09B9.1 protein. Length = 710 Score = 27.1 bits (57), Expect = 10.0 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%) Frame = +1 Query: 58 WGVKVIFIEKIY-KFIVYLVLWGNFEII*NLIILKVNFIYCILCIRVY 198 +G+K I ++ K ++ LW N E++ ++ K FI + CIR++ Sbjct: 220 YGIKSIKERNVFLKILLSFSLWTNAELLLSVKEQKPGFIKSLDCIRLF 267 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,402,477 Number of Sequences: 27780 Number of extensions: 67104 Number of successful extensions: 86 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 86 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 86 length of database: 12,740,198 effective HSP length: 78 effective length of database: 10,573,358 effective search space used: 1247656244 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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