Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1625
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    26   6.7  
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|...    26   6.7  

>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 475

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 137 EEFECERRGGHLEAVGHGLVQERHHHHGLSAAXL 36
           E+F CE RGG+ E  G G++++   +H L    L
Sbjct: 214 EDFGCEGRGGYFE--GAGILRDVVQNHLLQLLTL 245


>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 575 FWMFVCHSHSTIIFLQYYW 519
           F ++ CH ++ I F+ +YW
Sbjct: 224 FMLWQCHKNTEIKFIDFYW 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,421
Number of Sequences: 5004
Number of extensions: 36006
Number of successful extensions: 120
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)