Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1625
(763 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115... 31 1.0
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410... 31 1.3
03_03_0164 - 14979364-14979479,14979613-14980102 30 1.7
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067... 30 2.3
04_01_0253 - 3358090-3359052 30 2.3
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874 29 5.3
05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240 29 5.3
12_01_0074 - 615794-615883,616186-616391,616524-616614 28 7.1
06_03_0340 + 19703574-19704329 28 7.1
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 28 7.1
11_04_0382 - 17001848-17002237 28 9.3
>07_01_0163 +
1149466-1150593,1150733-1150937,1151453-1151485,
1152244-1153646
Length = 922
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = -3
Query: 260 CPEHGQRVRVVAHLLLYHRVQVRAVRLEEVSEVSLLGQV 144
C HGQ+V +L H+V++ + LE + EVSLL QV
Sbjct: 292 CKHHGQKVCGSGNL---HKVELTDISLEPIIEVSLLCQV 327
>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
4100974-4101107,4101337-4101435,4102619-4102994,
4103883-4104337,4104419-4107409
Length = 1460
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Frame = -1
Query: 337 PLVDALDARH----DQMAPLVDALDARHDLALNMGSVSASLHTSSCITVSRSAQFVLKKY 170
P ++ LD ++ DQ+ PL + N G +S I +S + VL++
Sbjct: 1115 PCLEMLDIQNCPSLDQLPPLPHSSTLSRISLKNAGIISLMELNDEEIVISGISDLVLERQ 1174
Query: 169 LKFPFLGR*SLKSLSVSG 116
L PF SLKS S+ G
Sbjct: 1175 LFLPFHNLRSLKSFSIPG 1192
>03_03_0164 - 14979364-14979479,14979613-14980102
Length = 201
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/44 (40%), Positives = 19/44 (43%)
Frame = +1
Query: 247 PCSGQGHGARQERRLVAPSGHGARQERRLVAPSTHVKHARSNRN 378
P SGQ G E AP G G R RR P T RS+ N
Sbjct: 115 PRSGQRGGEEGEVAAAAPGGGGRRWRRRRPPPPTAAAPLRSSPN 158
>10_08_0586 +
19005991-19006273,19006481-19006642,19006741-19006796,
19006899-19007061,19007753-19007859,19008879-19008945,
19009176-19009375
Length = 345
Score = 29.9 bits (64), Expect = 2.3
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +2
Query: 134 LQGLPAQEGKLQILLQDELRGPGHGDTGGGVQ-----RRGHAAHVQGKVMARV 277
L +PAQ+ L+++L RG G G G G+ RRG H G R+
Sbjct: 45 LDEVPAQDDLLRVVLIVADRGGGGGGRGSGISRGVAIRRGRGGHRDGDARCRL 97
>04_01_0253 - 3358090-3359052
Length = 320
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = +1
Query: 256 GQGHGARQERRLVAPSGHGARQERRLVAPSTHVKHARSNRNDS 384
G+G AR + P G AR+ERRL A + R S
Sbjct: 208 GEGVAARPREKTARPDGARARRERRLEAAGAEKREGRRRERAS 250
>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
Length = 118
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 167 EVSLLGQVVLEEFECERRGGHLEAVGHGLVQERHHHHG 54
E+S ++LEE + ER+ L G QE HHHHG
Sbjct: 11 ELSTAAPLLLEEEDEERQ--ELMEDDEGDEQEEHHHHG 46
>05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240
Length = 142
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +1
Query: 250 CSGQGHGARQERRLVAPSGHGARQ--ERRLVA-PSTHVKHARSNRNDSINIT*CLVKI 414
C G HG +RR +G GA + RRL A P H ++N + +T C + +
Sbjct: 18 CFGLAHGGAAQRRRRTAAGFGAARWSGRRLRALPPQHFLSPTIDKNQDLIVTVCALML 75
>12_01_0074 - 615794-615883,616186-616391,616524-616614
Length = 128
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -3
Query: 122 ERRGGHLEAVGHGLVQERHHHHGL 51
E GG LEA L+ +RHHHH L
Sbjct: 2 EAAGGQLEAALL-LIMQRHHHHSL 24
>06_03_0340 + 19703574-19704329
Length = 251
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 250 CSGQGHGARQERRLVAPSGHGARQERRLVAPSTHVKHAR 366
CSG GHGA +++ V +G Q R + H HA+
Sbjct: 173 CSGSGHGAAEDKCCVCLAGMREAQALRDLPRCGHRFHAK 211
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 28.3 bits (60), Expect = 7.1
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -3
Query: 194 RAVRLEEVSEVSLLGQVVLEEFECERRGGHLEAVGHGLVQERHHHH 57
R+ LEE S+ + G E+E R G GH RHHHH
Sbjct: 1284 RSRSLEESSDDAAAG-----EYEKVRNGKRPHKTGHHRHHHRHHHH 1324
>11_04_0382 - 17001848-17002237
Length = 129
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 244 CPCSGQGHGARQERRLVAPSGHG 312
C G GHG+R ER LV +G G
Sbjct: 49 CSGGGGGHGSRSERCLVCGAGAG 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,980
Number of Sequences: 37544
Number of extensions: 249837
Number of successful extensions: 1037
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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