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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1625
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0163 + 1149466-1150593,1150733-1150937,1151453-1151485,115...    31   1.0  
01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,410...    31   1.3  
03_03_0164 - 14979364-14979479,14979613-14980102                       30   1.7  
10_08_0586 + 19005991-19006273,19006481-19006642,19006741-190067...    30   2.3  
04_01_0253 - 3358090-3359052                                           30   2.3  
10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874           29   5.3  
05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240           29   5.3  
12_01_0074 - 615794-615883,616186-616391,616524-616614                 28   7.1  
06_03_0340 + 19703574-19704329                                         28   7.1  
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    28   7.1  
11_04_0382 - 17001848-17002237                                         28   9.3  

>07_01_0163 +
           1149466-1150593,1150733-1150937,1151453-1151485,
           1152244-1153646
          Length = 922

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/39 (43%), Positives = 24/39 (61%)
 Frame = -3

Query: 260 CPEHGQRVRVVAHLLLYHRVQVRAVRLEEVSEVSLLGQV 144
           C  HGQ+V    +L   H+V++  + LE + EVSLL QV
Sbjct: 292 CKHHGQKVCGSGNL---HKVELTDISLEPIIEVSLLCQV 327


>01_01_0558 + 4098383-4098510,4100462-4100572,4100765-4100853,
            4100974-4101107,4101337-4101435,4102619-4102994,
            4103883-4104337,4104419-4107409
          Length = 1460

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
 Frame = -1

Query: 337  PLVDALDARH----DQMAPLVDALDARHDLALNMGSVSASLHTSSCITVSRSAQFVLKKY 170
            P ++ LD ++    DQ+ PL  +         N G +S        I +S  +  VL++ 
Sbjct: 1115 PCLEMLDIQNCPSLDQLPPLPHSSTLSRISLKNAGIISLMELNDEEIVISGISDLVLERQ 1174

Query: 169  LKFPFLGR*SLKSLSVSG 116
            L  PF    SLKS S+ G
Sbjct: 1175 LFLPFHNLRSLKSFSIPG 1192


>03_03_0164 - 14979364-14979479,14979613-14980102
          Length = 201

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 18/44 (40%), Positives = 19/44 (43%)
 Frame = +1

Query: 247 PCSGQGHGARQERRLVAPSGHGARQERRLVAPSTHVKHARSNRN 378
           P SGQ  G   E    AP G G R  RR   P T     RS+ N
Sbjct: 115 PRSGQRGGEEGEVAAAAPGGGGRRWRRRRPPPPTAAAPLRSSPN 158


>10_08_0586 +
           19005991-19006273,19006481-19006642,19006741-19006796,
           19006899-19007061,19007753-19007859,19008879-19008945,
           19009176-19009375
          Length = 345

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 134 LQGLPAQEGKLQILLQDELRGPGHGDTGGGVQ-----RRGHAAHVQGKVMARV 277
           L  +PAQ+  L+++L    RG G G  G G+      RRG   H  G    R+
Sbjct: 45  LDEVPAQDDLLRVVLIVADRGGGGGGRGSGISRGVAIRRGRGGHRDGDARCRL 97


>04_01_0253 - 3358090-3359052
          Length = 320

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +1

Query: 256 GQGHGARQERRLVAPSGHGARQERRLVAPSTHVKHARSNRNDS 384
           G+G  AR   +   P G  AR+ERRL A     +  R     S
Sbjct: 208 GEGVAARPREKTARPDGARARRERRLEAAGAEKREGRRRERAS 250


>10_02_0133 - 5661860-5662034,5662229-5662384,5663849-5663874
          Length = 118

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -3

Query: 167 EVSLLGQVVLEEFECERRGGHLEAVGHGLVQERHHHHG 54
           E+S    ++LEE + ER+   L     G  QE HHHHG
Sbjct: 11  ELSTAAPLLLEEEDEERQ--ELMEDDEGDEQEEHHHHG 46


>05_01_0211 + 1591733-1591891,1592761-1592813,1593024-1593240
          Length = 142

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 250 CSGQGHGARQERRLVAPSGHGARQ--ERRLVA-PSTHVKHARSNRNDSINIT*CLVKI 414
           C G  HG   +RR    +G GA +   RRL A P  H      ++N  + +T C + +
Sbjct: 18  CFGLAHGGAAQRRRRTAAGFGAARWSGRRLRALPPQHFLSPTIDKNQDLIVTVCALML 75


>12_01_0074 - 615794-615883,616186-616391,616524-616614
          Length = 128

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -3

Query: 122 ERRGGHLEAVGHGLVQERHHHHGL 51
           E  GG LEA    L+ +RHHHH L
Sbjct: 2   EAAGGQLEAALL-LIMQRHHHHSL 24


>06_03_0340 + 19703574-19704329
          Length = 251

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 250 CSGQGHGARQERRLVAPSGHGARQERRLVAPSTHVKHAR 366
           CSG GHGA +++  V  +G    Q  R +    H  HA+
Sbjct: 173 CSGSGHGAAEDKCCVCLAGMREAQALRDLPRCGHRFHAK 211


>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -3

Query: 194  RAVRLEEVSEVSLLGQVVLEEFECERRGGHLEAVGHGLVQERHHHH 57
            R+  LEE S+ +  G     E+E  R G      GH     RHHHH
Sbjct: 1284 RSRSLEESSDDAAAG-----EYEKVRNGKRPHKTGHHRHHHRHHHH 1324


>11_04_0382 - 17001848-17002237
          Length = 129

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 244 CPCSGQGHGARQERRLVAPSGHG 312
           C   G GHG+R ER LV  +G G
Sbjct: 49  CSGGGGGHGSRSERCLVCGAGAG 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,647,980
Number of Sequences: 37544
Number of extensions: 249837
Number of successful extensions: 1037
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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