Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1625
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25158| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   3e-08
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_17407| Best HMM Match : PADR1 (HMM E-Value=2)                       28   9.5  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_31685| Best HMM Match : DUF1540 (HMM E-Value=3.6)                   28   9.5  
SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_25158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = +3

Query: 54  TVVVVTFLXEPVPYRFKVPAAPLTLKLFKDYLPKKGNFRYFFKTNCADLD-TVIQEEVCN 230
           T ++     EP+ YR  +P   +TL  FK  + +KG FRYFFKT   D +  V+ EEV  
Sbjct: 657 TTIIYWLWGEPIAYRTSLPGKHITLGQFKTLIMRKGEFRYFFKTKTEDRECEVVYEEVKE 716

Query: 231 DADTLPMF 254
           D   LP F
Sbjct: 717 DKMMLPTF 724


>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1028

 Score = 36.3 bits (80), Expect = 0.027
 Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
 Frame = +3

Query: 54  TVVVVTFLXEPVPYRFKVPAAP--LTLKLFKDYLPKKGNFRYFFKTNCADLDTVIQEEVC 227
           T V+     E  PY  K+   P  +TL  FK+ L  + N+++FFK+   D   V++EE+ 
Sbjct: 354 TKVIYHIDDEDTPYLVKLGKTPDIVTLGDFKNVL-NRPNYKFFFKSMDDDFG-VVKEEIS 411

Query: 228 NDADTLPMF 254
           +D   LP F
Sbjct: 412 DDETHLPCF 420


>SB_17407| Best HMM Match : PADR1 (HMM E-Value=2)
          Length = 365

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 410 FTRHQVILIESFLFERACLTWVDGATSR--RS*RAP 309
           F  H+V++   FLFE  C   V G+  R  R  RAP
Sbjct: 243 FVNHEVLVEVHFLFEERCAVLVGGSCRRGCRPRRAP 278


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 92   LPLQGARRAAHTQTLQGLPAQEGKLQILLQDELRGPGHGDTGGGVQRRGHAAHVQGKV-M 268
            L L G RRAA      G+  +   +  LL +   G    +  GG + R HA HV  K+  
Sbjct: 1299 LSLDGLRRAARLSCTLGIQTRCELVLALLANASCGV---EGSGGKRARAHAPHVPVKLHA 1355

Query: 269  ARVKSVD 289
            A V S+D
Sbjct: 1356 AHVLSMD 1362


>SB_31685| Best HMM Match : DUF1540 (HMM E-Value=3.6)
          Length = 785

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 410 FTRHQVILIESFLFERACLTWVDGATSR--RS*RAP 309
           F  H+V++   FLFE  C   V G+  R  R  RAP
Sbjct: 450 FVNHEVLVEVHFLFEERCAVLVGGSCRRGCRPRRAP 485


>SB_23696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 137 QGLPAQEGKLQILLQDELRGPGHGDTGGG 223
           +GL  +EG   + L    RG G GD GGG
Sbjct: 405 EGLRGEEGSPSVFLGGGGRGGGGGDGGGG 433


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,911
Number of Sequences: 59808
Number of extensions: 280683
Number of successful extensions: 790
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 789
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)