Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1625
         (763 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-7|CAB04330.1|  290|Caenorhabditis elegans Hypothetical pr...    31   1.2  
U23523-5|AAC46556.1|   77|Caenorhabditis elegans Hypothetical pr...    29   4.8  
Z75711-10|CAK55176.1|  400|Caenorhabditis elegans Hypothetical p...    28   8.3  
Z75711-9|CAK55175.1|  331|Caenorhabditis elegans Hypothetical pr...    28   8.3  
DQ185512-1|ABA28304.1|  400|Caenorhabditis elegans AXL-1 protein.      28   8.3  

>Z81533-7|CAB04330.1|  290|Caenorhabditis elegans Hypothetical
           protein F36G9.11 protein.
          Length = 290

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -3

Query: 185 RLEEVSEVSLLGQVVLEEFECERRGGHLEAVGHGLVQERHHHH 57
           +++++ +V  +G   + +F   RRGG     G   V   HHHH
Sbjct: 26  KVKKIVKVMTVGGKPMNDFGGSRRGGFRRRGGDTHVHHHHHHH 68


>U23523-5|AAC46556.1|   77|Caenorhabditis elegans Hypothetical
           protein F53A9.1 protein.
          Length = 77

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 110 GHLEAVGHGLVQERHHHHG 54
           G L  +GH +    HHHHG
Sbjct: 52  GFLHELGHAMTGHHHHHHG 70


>Z75711-10|CAK55176.1|  400|Caenorhabditis elegans Hypothetical
           protein K02B12.4b protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 111 AAPLTLKLFKDY--LPKKGNFRYFFKTNCADLDTVIQEEVC-NDADTLPMF 254
           A  +TL+ F+    L    N R+FFK+ C D     Q  +  +D D LP+F
Sbjct: 330 AQSVTLRYFRHLFGLHYTDNCRFFFKSTCEDGSAQYQWTLLFHDDDILPVF 380


>Z75711-9|CAK55175.1|  331|Caenorhabditis elegans Hypothetical
           protein K02B12.4a protein.
          Length = 331

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 111 AAPLTLKLFKDY--LPKKGNFRYFFKTNCADLDTVIQEEVC-NDADTLPMF 254
           A  +TL+ F+    L    N R+FFK+ C D     Q  +  +D D LP+F
Sbjct: 261 AQSVTLRYFRHLFGLHYTDNCRFFFKSTCEDGSAQYQWTLLFHDDDILPVF 311


>DQ185512-1|ABA28304.1|  400|Caenorhabditis elegans AXL-1 protein.
          Length = 400

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 111 AAPLTLKLFKDY--LPKKGNFRYFFKTNCADLDTVIQEEVC-NDADTLPMF 254
           A  +TL+ F+    L    N R+FFK+ C D     Q  +  +D D LP+F
Sbjct: 330 AQSVTLRYFRHLFGLHYTDNCRFFFKSTCEDGSAQYQWTLLFHDDDILPVF 380


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,406,192
Number of Sequences: 27780
Number of extensions: 209719
Number of successful extensions: 600
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)