Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1625
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    23   4.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    23   4.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    23   4.1  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   7.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   9.4  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 130 LSVSGAAGTLKR*GTGSXRNVTTTTV 53
           +++ G   T  R  TGS    TTTTV
Sbjct: 282 VTIGGGGTTSSRRTTGSRAAATTTTV 307


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 130 LSVSGAAGTLKR*GTGSXRNVTTTTV 53
           +++ G   T  R  TGS    TTTTV
Sbjct: 282 VTIGGGGTTSSRRTTGSRAAATTTTV 307


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 130 LSVSGAAGTLKR*GTGSXRNVTTTTV 53
           +++ G   T  R  TGS    TTTTV
Sbjct: 282 VTIGGGGTTSSRRTTGSRAAATTTTV 307


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/69 (18%), Positives = 30/69 (43%)
 Frame = -1

Query: 304 QMAPLVDALDARHDLALNMGSVSASLHTSSCITVSRSAQFVLKKYLKFPFLGR*SLKSLS 125
           + A + +  D R+         S     ++ + +  S     + + +FP LGR +++ + 
Sbjct: 371 KFADIKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMR 430

Query: 124 VSGAAGTLK 98
            + A G +K
Sbjct: 431 QTVAVGVIK 439


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = +1

Query: 250 CSGQGHGARQERRLVAPSGHGARQERRLVA 339
           CSG+     +   +  PSGH A     L A
Sbjct: 500 CSGEVASLTEYHHVAPPSGHHASSAPLLAA 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,513
Number of Sequences: 438
Number of extensions: 2723
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)