Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1625
         (763 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07830.1 68416.m00958 polygalacturonase, putative / pectinase...    32   0.36 
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do...    29   3.4  

>At3g07830.1 68416.m00958 polygalacturonase, putative / pectinase,
           putative strong similarity to polygalacturonase (PGA3)
           GI:3152948 from [Arabidopsis thaliana]
          Length = 397

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +2

Query: 155 EGKLQILLQDELRGPGHGDTGGGVQRRGHAAHVQG 259
           +G + +L+++ + GPGHG + G + R GH   V G
Sbjct: 218 DGMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSG 252


>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
           domain-containing protein contains Pfam profiles
           PF02170: PAZ domain, PF02171: Piwi domain
          Length = 1194

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 191 RGPGHGDTGGGVQRRGHAAHVQGKVMAR 274
           RG GHG  GGG + RG++   +G V  R
Sbjct: 84  RGDGHGRGGGGDRGRGYSGRGRGFVQDR 111



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 191 RGPGHGDTGGGVQRRGHAAHVQGK 262
           RG GHG  GGG + RG++    G+
Sbjct: 46  RGDGHGRGGGGDRGRGYSGRGDGR 69


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,573,693
Number of Sequences: 28952
Number of extensions: 190903
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)