Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1623X
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac...    27   1.6  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        25   5.0  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   6.6  
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc...    25   6.6  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    24   8.7  

>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 265

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -1

Query: 263 RNRRVVVPTRLDSQEVLPPVIFWYYKPESQXRTSCIQSRDAAKA 132
           R    + PTR+ S   LP  +   Y+ ESQ     ++ +D  +A
Sbjct: 13  RGHSEMAPTRITSSRALPAHLKLKYRQESQGTEEEVRKQDLREA 56


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 349 TLRCNF*GLKYSYNGCPILQTETHYC 272
           T+RCN     Y++NG   L+T T  C
Sbjct: 306 TIRCNKKSNCYNWNGIAALETYTTEC 331


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +1

Query: 13  FDXRSLRLVEPVADAMYIPAWSELILCVVQASTVAVCVSPALAASRDCIQDVRXCDSGL 189
           ++ R+ +L   +ADAM +P ++ELI   V  S      + AL A  +  +     ++GL
Sbjct: 430 WEDRAEKLNISIADAMDVPPYAELIYIFVICSLKDPKEAEALRADLETCKCSEEDEAGL 488


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 190 INPNHNXEHPVYSHATRLRPATHIPQRCSPEQHIEL 83
           I   H+     Y+ A RL   TH+P      QH++L
Sbjct: 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL 454


>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 130 ATHIPQRCSPEQHIELVRT 74
           ATHIP      QH+EL R+
Sbjct: 171 ATHIPVGKDQSQHVELTRS 189


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 313 YNGCPILQTETHYCFTA 263
           Y  CP+L +   +CF+A
Sbjct: 517 YPACPLLTSRVRFCFSA 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,813,630
Number of Sequences: 5004
Number of extensions: 34110
Number of successful extensions: 77
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)