BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1623X (428 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_1040 - 8203087-8203631,8205489-8205524,8205731-8205869 31 0.39 02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092... 29 1.6 09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697... 28 3.7 06_03_1401 + 29904888-29905177,29905774-29905876 27 4.9 01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305 27 6.4 >01_01_1040 - 8203087-8203631,8205489-8205524,8205731-8205869 Length = 239 Score = 31.1 bits (67), Expect = 0.39 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 70 AWSELILCVVQASTVAVCVSPALAASRDCIQDVRXCD 180 +WS L+L V A +AV +P+LA D +QD+ D Sbjct: 8 SWSSLLLAAV-AVALAVAAAPSLAGDPDYLQDICVAD 43 >02_05_0286 - 27506925-27507278,27508439-27508812,27509041-27509218, 27510878-27511105,27511215-27511316,27511415-27512131, 27512270-27512387,27512500-27512744,27512854-27513054, 27513920-27514324 Length = 973 Score = 29.1 bits (62), Expect = 1.6 Identities = 17/49 (34%), Positives = 26/49 (53%) Frame = +1 Query: 7 LMFDXRSLRLVEPVADAMYIPAWSELILCVVQASTVAVCVSPALAASRD 153 L+ SL LVE + D WS++ C++ +TV VS +A SR+ Sbjct: 546 LVIIDNSLALVETLMDER---RWSDMFSCMIAKATVLEEVSTGIAGSRN 591 >09_06_0020 - 20267190-20267612,20269086-20269495,20269573-20269747, 20270833-20271066,20271164-20271265,20271354-20272091, 20272204-20272321,20272417-20272667,20272768-20272932 Length = 871 Score = 27.9 bits (59), Expect = 3.7 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +1 Query: 25 SLRLVEPVADAMYIPAWSELILCVVQASTVAVCVSPALAASR 150 S+ LV+ + DA P WSE+ CVV ++ +S + +R Sbjct: 414 SVDLVDSLMDA---PRWSEMFPCVVARASTTDIISSGMGGTR 452 >06_03_1401 + 29904888-29905177,29905774-29905876 Length = 130 Score = 27.5 bits (58), Expect = 4.9 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = +3 Query: 27 TAARRASSRCDVHSSVVRTNSMCCSGEH 110 +AARRA + C T CCSG H Sbjct: 17 SAARRAVAACKSACEAFGTAEYCCSGAH 44 >01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305 Length = 396 Score = 27.1 bits (57), Expect = 6.4 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = +2 Query: 260 FCREAVMRFRLKDGAAVVTILETLEVTSQG 349 F R RFR DGA VVT+ + L+ + G Sbjct: 282 FSRRGWSRFRPMDGAVVVTVGDQLQACNGG 311 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,182,651 Number of Sequences: 37544 Number of extensions: 272066 Number of successful extensions: 646 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 637 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 646 length of database: 14,793,348 effective HSP length: 75 effective length of database: 11,977,548 effective search space used: 802495716 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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