Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1623X
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1040 - 8203087-8203631,8205489-8205524,8205731-8205869           31   0.39 
02_05_0286 - 27506925-27507278,27508439-27508812,27509041-275092...    29   1.6  
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697...    28   3.7  
06_03_1401 + 29904888-29905177,29905774-29905876                       27   4.9  
01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305     27   6.4  

>01_01_1040 - 8203087-8203631,8205489-8205524,8205731-8205869
          Length = 239

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 70  AWSELILCVVQASTVAVCVSPALAASRDCIQDVRXCD 180
           +WS L+L  V A  +AV  +P+LA   D +QD+   D
Sbjct: 8   SWSSLLLAAV-AVALAVAAAPSLAGDPDYLQDICVAD 43


>02_05_0286 -
           27506925-27507278,27508439-27508812,27509041-27509218,
           27510878-27511105,27511215-27511316,27511415-27512131,
           27512270-27512387,27512500-27512744,27512854-27513054,
           27513920-27514324
          Length = 973

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = +1

Query: 7   LMFDXRSLRLVEPVADAMYIPAWSELILCVVQASTVAVCVSPALAASRD 153
           L+    SL LVE + D      WS++  C++  +TV   VS  +A SR+
Sbjct: 546 LVIIDNSLALVETLMDER---RWSDMFSCMIAKATVLEEVSTGIAGSRN 591


>09_06_0020 -
           20267190-20267612,20269086-20269495,20269573-20269747,
           20270833-20271066,20271164-20271265,20271354-20272091,
           20272204-20272321,20272417-20272667,20272768-20272932
          Length = 871

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +1

Query: 25  SLRLVEPVADAMYIPAWSELILCVVQASTVAVCVSPALAASR 150
           S+ LV+ + DA   P WSE+  CVV  ++    +S  +  +R
Sbjct: 414 SVDLVDSLMDA---PRWSEMFPCVVARASTTDIISSGMGGTR 452


>06_03_1401 + 29904888-29905177,29905774-29905876
          Length = 130

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 27  TAARRASSRCDVHSSVVRTNSMCCSGEH 110
           +AARRA + C        T   CCSG H
Sbjct: 17  SAARRAVAACKSACEAFGTAEYCCSGAH 44


>01_06_0676 + 31101633-31102192,31102450-31102807,31103033-31103305
          Length = 396

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 260 FCREAVMRFRLKDGAAVVTILETLEVTSQG 349
           F R    RFR  DGA VVT+ + L+  + G
Sbjct: 282 FSRRGWSRFRPMDGAVVVTVGDQLQACNGG 311


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,182,651
Number of Sequences: 37544
Number of extensions: 272066
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)