Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1623X
         (428 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   1.2  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              29   1.6  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_41258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.9  
SB_33269| Best HMM Match : Corona_3 (HMM E-Value=2.9)                  28   3.8  
SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 28   3.8  
SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.0  

>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 3/102 (2%)
 Frame = -2

Query: 427 DWW--TSSQLTWC*VVTGTHRNYANAPPTLRCNF*GLKYSYNGCPI-LQTETHYCFTAEI 257
           +W+    +Q  WC   T T  N  + P     N+     + + C    +T+ + C   +I
Sbjct: 44  NWYHPNKTQTNWC-YPTNTQANLCH-PTKTHANWNHPSKTQDNCGHPSETQAYLCHPTKI 101

Query: 256 GGWWYPPAWTHKRSYHQ*SFGIINPNHNXEHPVYSHATRLRP 131
              WY P+ T    YH           N  HP  + A    P
Sbjct: 102 QANWYHPSKTQANLYHH-----TKTQANWYHPTKTQANWYHP 138



 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 322 KYSYNGCPILQTETHYCFTAEIGGWWYPPAWTHKRSYHQ*SFGIINPNHNXEHPVYSHAT 143
           K   N C   +T+ ++C T++I   WY P  T     +       N   N  HP  +HA 
Sbjct: 186 KTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQTNWCYP-----TNTQANLCHPTKTHAN 240

Query: 142 RLRPA 128
              P+
Sbjct: 241 WNHPS 245



 Score = 27.9 bits (59), Expect = 3.8
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = -2

Query: 427 DWW--TSSQLTWC*VVTGTHRNYANAPPT-LRCNF*GLKYSYNGCPILQTETHYCFTAEI 257
           +W+    +Q  WC   T T  N  +   T    N      +  G P  +T+ + C   +I
Sbjct: 576 NWYHPNKTQTNWC-YPTNTQANLCHPTKTHANWNHPSKTQANCGHPS-ETQAYLCHPTKI 633

Query: 256 GGWWYPPAWTHKRSYH 209
              WY P+ T    YH
Sbjct: 634 QANWYHPSKTQANLYH 649


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/65 (27%), Positives = 27/65 (41%)
 Frame = -2

Query: 322 KYSYNGCPILQTETHYCFTAEIGGWWYPPAWTHKRSYHQ*SFGIINPNHNXEHPVYSHAT 143
           K   N C   +T+ ++C T++I   WY P  T     +       N   N  HP  +HA 
Sbjct: 31  KTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQTNWCYP-----TNTQANLCHPTKTHAN 85

Query: 142 RLRPA 128
              P+
Sbjct: 86  WNHPS 90


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 385 TGTHRNYANAPPTLRCNF*-GLKYSYNGCPILQTETHYCFTAEIGGWWYPPAWTHKRSYH 209
           T TH N+ + P T   N+    K   N C   +T+   C   +    WY P+ T    YH
Sbjct: 300 TKTHANWCH-PTTTHANWCYPTKTQANWCHPTKTQACLCHPTKTQANWYHPSKTQVNWYH 358



 Score = 27.5 bits (58), Expect = 5.0
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = -2

Query: 418 TSSQLTWC*VVTGTHRNYANAPPTLRCNF*GLKYSYNGCPILQTETHYCFTAEIGGWWYP 239
           T +Q  WC   T T  N+ +  PT        K   N C   +T+ + C   +    WY 
Sbjct: 420 TKTQANWC-HPTKTQANWCH--PT--------KTQANWCHPTKTQANLCHPTKTQANWYH 468

Query: 238 PAWTHKRSYH 209
           P+ T    YH
Sbjct: 469 PSKTQANWYH 478



 Score = 27.1 bits (57), Expect = 6.6
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
 Frame = -2

Query: 292 QTETHYCFTAEIGGWWYPPAWTHKRSYHQ*SFGIINPNH------NXEHPVYSHATRLRP 131
           +T+ ++    +    WY P+ T    YH  S    N NH      N  HP  +HA    P
Sbjct: 251 KTQANWYHPTKTQANWYHPSKTQANWYHP-SKTQSNWNHPSKTQANCGHPTKTHANWCHP 309

Query: 130 ATHIPQRCSP 101
            T     C P
Sbjct: 310 TTTHANWCYP 319


>SB_17246| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 602

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 39  RASSRCDVHSSVVRTNSMCCSGEHRCGMCVAGLSR 143
           R S +C V S ++     C  G++ CG C+ G S+
Sbjct: 146 RGSVQCSVKSCLLANRRPCEYGQNFCGPCLNGYSQ 180


>SB_41258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  LCVVQASTVAVCVSPALAASRDCIQDVR 171
           +CVVQA  V VCV P +   R C+  VR
Sbjct: 107 VCVVQARVVQVCVVP-VCVVRVCVVQVR 133


>SB_33269| Best HMM Match : Corona_3 (HMM E-Value=2.9)
          Length = 279

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 61  YIPAWSELILCVVQASTVAVCVSPALAAS 147
           Y P W +++L   +A+++AVCV   L  +
Sbjct: 72  YFPVWLKIVLTPFKANSLAVCVVVVLTVA 100


>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 61  YIPAWSELILCVVQASTVAVCVSPALAAS 147
           Y P W +++L   +A+++AVCV   L  +
Sbjct: 310 YFPVWLKIVLTPFKANSLAVCVVVVLTVA 338


>SB_16235| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4072

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +2

Query: 287  RLKDGAAVVTILET-LEVTSQGGWRICVISMGSSNHLTPGEL 409
            R KDG     + E  L V +  GWR+ ++ + + N    GEL
Sbjct: 3873 RTKDGTIAFVLSEQRLYVDTNSGWRLVILRLVALNAPVTGEL 3914


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,513,741
Number of Sequences: 59808
Number of extensions: 299982
Number of successful extensions: 608
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)