Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1623X
         (428 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   3.3  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   5.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.8  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   7.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.7  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 91   CVVQASTVAVCVSPALAASR 150
            CV++AST A  V  A+ ASR
Sbjct: 1106 CVLRASTPAPVVLEAVHASR 1125


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 10/42 (23%), Positives = 17/42 (40%)
 Frame = +3

Query: 45  SSRCDVHSSVVRTNSMCCSGEHRCGMCVAGLSRVA*LYTGCS 170
           SS C +       + +C   ++  G+C  G+        GCS
Sbjct: 53  SSACGIVQCAKGPDELCGGPQNYLGICAEGMQCSCNKCIGCS 94


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +3

Query: 15  RXEITAARRASSRCDVHSSVVRTNSMCCSGEH 110
           R ++ A    +   D     V T + C SGEH
Sbjct: 275 RRKVLAGIVQTKGSDAELICVTTGTKCVSGEH 306


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 332 EVTSQGGWRICV 367
           +VT  G WR+CV
Sbjct: 97  KVTYSGLWRVCV 108


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 370 NYANAPPTLRC 338
           NY   PPTL C
Sbjct: 209 NYTACPPTLAC 219


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 200 RLLVVGPLVSPSGWVPPPSYFCREAV 277
           RL  +GP  S   ++PP +Y  R ++
Sbjct: 374 RLRYIGPPTSFPRFIPPNAYRFRPSL 399


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 211 GRTSCESKRVGTTTLLFLP 267
           GR++C S  V  +T  FLP
Sbjct: 295 GRSACHSPGVYPSTAGFLP 313


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,318
Number of Sequences: 438
Number of extensions: 2810
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11121030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)