Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1623X
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25440.1 68416.m03163 group II intron splicing factor CRS1-re...    28   2.3  
At4g05633.1 68417.m00876 hypothetical protein                          28   3.1  
At5g07080.1 68418.m00802 transferase family protein similar to 1...    27   5.4  
At5g18520.1 68418.m02187 expressed protein                             27   7.1  
At3g17850.1 68416.m02275 protein kinase, putative similar to IRE...    27   7.1  
At2g43220.1 68415.m05372 DC1 domain-containing protein contains ...    27   7.1  
At5g15330.1 68418.m01795 SPX (SYG1/Pho81/XPR1) domain-containing...    26   9.4  

>At3g25440.1 68416.m03163 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 380

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -2

Query: 127 THIPQRCSPEQHIELVRTTLECTSHLLLARR 35
           TH P+  +PE+H   ++  L+C +++ + RR
Sbjct: 107 THDPEILTPEEHFYYLKMGLKCKNYVPVGRR 137


>At4g05633.1 68417.m00876 hypothetical protein
          Length = 376

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 163 PVYSHATRLRP-ATHIPQRCSPEQHIELVRTTLECTSHLLLARRAAVISY 17
           P Y H +  RP +T +PQR SP   +  +  +   T+   L R AAV  +
Sbjct: 19  PTYLHFSTTRPNSTFLPQRTSPRFTVSHLTPSDYSTTGKALDRFAAVTEF 68


>At5g07080.1 68418.m00802 transferase family protein similar to
           10-deacetylbaccatin III-10-O-acetyl transferase - Taxus
           cuspidata, AF193765, EMBL:AF193765; contains Pfam
           transferase family domain PF00248
          Length = 450

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 157 YSHATRLRPATH---IPQRCSPEQHIELVRTTLECT 59
           Y  A +L   +H   +  RCSP + +  VR T +CT
Sbjct: 82  YPLAGKLHRGSHDHRLELRCSPAEGVPFVRATADCT 117


>At5g18520.1 68418.m02187 expressed protein
          Length = 440

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 301 PILQTETHYCFTAEIGGWWYPPAWTHKRSYHQ 206
           P L +    C+ A +G W Y   WT+K++ H+
Sbjct: 176 PTLYSFFFLCYVAFLGFWSYT-CWTNKQTVHR 206


>At3g17850.1 68416.m02275 protein kinase, putative similar to IRE
            (incomplete root hair elongation) [Arabidopsis thaliana]
            gi|6729346|dbj|BAA89783; contains protein kinase domain
            Pfam:PF00069
          Length = 1296

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -2

Query: 184  PNHNXEHP--VYSHA-TRLRPATHIPQRCSPEQHIELVRTTLECTSHLLLARRAAVI 23
            P  N EHP  ++ +   R  P  H+P+  S E H  + R   E     L AR AA +
Sbjct: 1109 PPFNAEHPQQIFDNILNRKIPWPHVPEEMSAEAHDIIDRFLTEDPHQRLGARGAAEV 1165


>At2g43220.1 68415.m05372 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 538

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 51  RCDVHSSVVRTNSMCCSGEHRCGMCVAGLSRVA*LYT 161
           RCD H  V+R+      G++ C +C A  +     YT
Sbjct: 421 RCDTHYLVLRSGEEAPEGKYWCEICEAETNPERWFYT 457


>At5g15330.1 68418.m01795 SPX (SYG1/Pho81/XPR1) domain-containing
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profile PF03105: SPX domain
          Length = 318

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -2

Query: 214 YHQ*SFGIINPNHNXEHPVYSHATRLRPA 128
           Y+   FG  N +HN   PV++  T +  A
Sbjct: 37  YYSADFGPANSDHNDSRPVFADTTNISSA 65


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,936,550
Number of Sequences: 28952
Number of extensions: 198096
Number of successful extensions: 465
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)