BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1621 (838 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|... 85 1e-17 SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz... 28 1.4 SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 27 2.5 SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|... 27 4.4 SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 26 7.6 SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 26 7.6 SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 26 7.6 >SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|Schizosaccharomyces pombe|chr 1|||Manual Length = 243 Score = 85.0 bits (201), Expect = 1e-17 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 2/109 (1%) Frame = +1 Query: 1 KTRSNPENNVGLLTLAN--VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALK 174 K NPEN GL+T+ + +VL+TLT D G+ +S +H + G+ GI+IA LALK Sbjct: 40 KINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALK 99 Query: 175 HRQGKNHKMRIVVFVGSPVNTDEKELVN*LKG*RRRKSTVMLFRLERIQ 321 HR+ K + RIV FVGSP+ DEK L+ K ++ + + + +Q Sbjct: 100 HRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ 148 Score = 33.9 bits (74), Expect = 0.029 Identities = 15/21 (71%), Positives = 17/21 (80%) Frame = +2 Query: 500 FRIGVDPNVDPELALALRVSM 562 F GVDPN+D ELALAL +SM Sbjct: 198 FEYGVDPNLDVELALALELSM 218 >SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schizosaccharomyces pombe|chr 1|||Manual Length = 372 Score = 28.3 bits (60), Expect = 1.4 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +3 Query: 285 VNCDVVSFGEDSENNPLLTTFVNTLNG 365 VN ++VS ED++ L TF+N + G Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362 >SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosaccharomyces pombe|chr 2|||Manual Length = 421 Score = 27.5 bits (58), Expect = 2.5 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%) Frame = -2 Query: 555 TRRANASSGSTLGSTPIRKETNQSQKGXXXXXLSEDLLSKPQKAQHSLQLAQ--TQGDFP 382 TR+ NA+SGS L TP ++T+ S L S P ++ S Q +Q ++ +P Sbjct: 261 TRQPNATSGSPLSVTPFLQKTS----------TSIGLSSSPPQSSPSAQSSQPFSRDKYP 310 Query: 381 QSMCLS 364 SM +S Sbjct: 311 HSMTVS 316 >SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|Schizosaccharomyces pombe|chr 3|||Manual Length = 307 Score = 26.6 bits (56), Expect = 4.4 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Frame = +1 Query: 4 TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 117 T + P+N+ V +L E++ATLT + + ++ R+Q Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240 >SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pombe|chr 2|||Manual Length = 662 Score = 25.8 bits (54), Expect = 7.6 Identities = 10/18 (55%), Positives = 16/18 (88%) Frame = +2 Query: 701 ELSEEEQIALAMQMSMQQ 754 EL+E+EQI LAM++S+ + Sbjct: 644 ELNEQEQIELAMRLSLME 661 >SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosaccharomyces pombe|chr 1|||Manual Length = 639 Score = 25.8 bits (54), Expect = 7.6 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = +3 Query: 318 SENNPLLTTFVNTLNGKDTSTGGSHLVSVP 407 S++NP F N+L G D T GS + P Sbjct: 93 SKDNPQNNDFTNSLQGLDFGTFGSRIQREP 122 >SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 288 Score = 25.8 bits (54), Expect = 7.6 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%) Frame = +3 Query: 240 RKGTRKLAKRLKKE-KVNCDVVSFGEDSE----NNPLLTTFVNTLNGKDTSTGGSHL 395 +K L+K++K+ KVN +SFGED E + PL GKD S S L Sbjct: 51 KKRKDALSKKVKQGIKVNKGKLSFGEDEELENDDLPLKKVEKKMFMGKDPSADTSFL 107 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,085,006 Number of Sequences: 5004 Number of extensions: 58923 Number of successful extensions: 141 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 135 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 139 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 412451140 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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