Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1621
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit Rpn10|...    85   1e-17
SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein] reductase|Schiz...    28   1.4  
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   2.5  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    27   4.4  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    26   7.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   7.6  
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc...    26   7.6  

>SPAC637.10c |rpn10|pus1|19S proteasome regulatory subunit
           Rpn10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 85.0 bits (201), Expect = 1e-17
 Identities = 43/109 (39%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
 Frame = +1

Query: 1   KTRSNPENNVGLLTLAN--VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALK 174
           K   NPEN  GL+T+ +   +VL+TLT D G+ +S +H +   G+     GI+IA LALK
Sbjct: 40  KINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALK 99

Query: 175 HRQGKNHKMRIVVFVGSPVNTDEKELVN*LKG*RRRKSTVMLFRLERIQ 321
           HR+ K  + RIV FVGSP+  DEK L+   K  ++    + +  +  +Q
Sbjct: 100 HRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ 148



 Score = 33.9 bits (74), Expect = 0.029
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 500 FRIGVDPNVDPELALALRVSM 562
           F  GVDPN+D ELALAL +SM
Sbjct: 198 FEYGVDPNLDVELALALELSM 218


>SPAC26F1.04c |etr1||enoyl-[acyl-carrier protein]
           reductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 VNCDVVSFGEDSENNPLLTTFVNTLNG 365
           VN ++VS  ED++    L TF+N + G
Sbjct: 336 VNTELVSLKEDADEKTFLDTFLNAIEG 362


>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
 Frame = -2

Query: 555 TRRANASSGSTLGSTPIRKETNQSQKGXXXXXLSEDLLSKPQKAQHSLQLAQ--TQGDFP 382
           TR+ NA+SGS L  TP  ++T+           S  L S P ++  S Q +Q  ++  +P
Sbjct: 261 TRQPNATSGSPLSVTPFLQKTS----------TSIGLSSSPPQSSPSAQSSQPFSRDKYP 310

Query: 381 QSMCLS 364
            SM +S
Sbjct: 311 HSMTVS 316


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 4   TRSNPENN-VGLLTLANVEVLATLTSDVGRIMSKLHRVQ 117
           T + P+N+ V +L     E++ATLT +   +  ++ R+Q
Sbjct: 202 TDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDRIQ 240


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +2

Query: 701 ELSEEEQIALAMQMSMQQ 754
           EL+E+EQI LAM++S+ +
Sbjct: 644 ELNEQEQIELAMRLSLME 661


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 318 SENNPLLTTFVNTLNGKDTSTGGSHLVSVP 407
           S++NP    F N+L G D  T GS +   P
Sbjct: 93  SKDNPQNNDFTNSLQGLDFGTFGSRIQREP 122


>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 240 RKGTRKLAKRLKKE-KVNCDVVSFGEDSE----NNPLLTTFVNTLNGKDTSTGGSHL 395
           +K    L+K++K+  KVN   +SFGED E    + PL         GKD S   S L
Sbjct: 51  KKRKDALSKKVKQGIKVNKGKLSFGEDEELENDDLPLKKVEKKMFMGKDPSADTSFL 107


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,006
Number of Sequences: 5004
Number of extensions: 58923
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)