Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1621
         (838 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0240 - 2506901-2507008,2507950-2508322,2508418-2508612,250...    72   7e-13
01_07_0114 + 41161923-41163251                                         31   0.86 
10_08_0456 - 18072618-18072718,18072837-18073016,18073425-180735...    29   4.6  
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575...    29   4.6  
01_06_0065 + 26107522-26107700,26110875-26111253                       29   6.1  
09_04_0084 - 14424740-14425081                                         28   8.0  
05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561     28   8.0  

>10_01_0240 -
           2506901-2507008,2507950-2508322,2508418-2508612,
           2508771-2508885,2510027-2510132,2510253-2510366,
           2510521-2510538
          Length = 342

 Score = 71.7 bits (168), Expect = 7e-13
 Identities = 38/87 (43%), Positives = 53/87 (60%), Gaps = 2/87 (2%)
 Frame = +1

Query: 1   KTRSNPENNVGLLTLAN--VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALK 174
           K  SNPEN VG+L +A   V VL   TSD  + ++ +H ++ +G+ NL   + IA L LK
Sbjct: 42  KMTSNPENTVGVLAMAGDRVRVLLAPTSDPVKFLACMHGLEASGEANLTATLNIAELVLK 101

Query: 175 HRQGKNHKMRIVVFVGSPVNTDEKELV 255
           +R  K    RIVVFVGSPV  ++ E +
Sbjct: 102 NRPDKRLSQRIVVFVGSPVKDEKLETI 128



 Score = 34.7 bits (76), Expect = 0.092
 Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +3

Query: 258 LAKRLKKEKVNCDVVSFGEDSENNPLLTTFVNTLNGKDTSTGG-SHLVSVPAG 413
           + K+LKK  V+ DVV FGE  +  P        L     + GG SH+V +P G
Sbjct: 128 IGKKLKKYNVSLDVVEFGESDDEKP------EKLEALVAAVGGSSHIVHIPPG 174



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 500 FRIGVDPNVDPELALALRVS 559
           +   VDPNVDPE A ALR+S
Sbjct: 203 YEYNVDPNVDPEFAEALRLS 222


>01_07_0114 + 41161923-41163251
          Length = 442

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 779 PALFSLVLLVACSFALQAQSAPLQR--VPLHHDRET 678
           PA+ SLVLL++C  A   Q AP +   VPL  D +T
Sbjct: 12  PAIVSLVLLISCMVATGEQQAPYKPLVVPLVRDSDT 47


>10_08_0456 -
           18072618-18072718,18072837-18073016,18073425-18073513,
           18074381-18074547,18074880-18075800
          Length = 485

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 791 LQKHPALFSLVLLVACSFALQAQSAPLQRVPL 696
           LQ+HPAL SL+ LVA        S P Q  PL
Sbjct: 30  LQRHPALRSLLRLVAAEQRFLDSSRPDQGAPL 61


>05_07_0112 -
           27755604-27756449,27756624-27756887,27757428-27757532,
           27757626-27758249,27759048-27759596,27759665-27760372,
           27760449-27760658,27761266-27761421,27761524-27761664,
           27762015-27762101,27762209-27762309,27763071-27763293,
           27763384-27763548,27763621-27763713,27763801-27764292,
           27764729-27764805,27765184-27765681,27765818-27766046
          Length = 1855

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +2

Query: 656 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPG*RELD 781
           A ERA A  + R+ MEL E+E++ L   +S  +  P    LD
Sbjct: 540 ANERATARRIAREYMELMEDERLELMELVSRSKGLPSMLSLD 581


>01_06_0065 + 26107522-26107700,26110875-26111253
          Length = 185

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 392 PCVCASWRLCC 424
           PC C +WRLCC
Sbjct: 20  PCPCPAWRLCC 30


>09_04_0084 - 14424740-14425081
          Length = 113

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +2

Query: 659 VERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPG 766
           V+ A A+   +D +EL EEE +ALA ++++  +  G
Sbjct: 26  VDDAAALLRLKDRIELQEEEALALAEELALLDDGAG 61


>05_05_0171 - 22936215-22936590,22937359-22937550,22937591-22938561
          Length = 512

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = -3

Query: 533 LGLHWDLLQFERRQTRARRACSITTYQRTCYQSLRK--HNTASSWHRHKVTSPSRCVFP 363
           LG  WD+ +  R  +RA     +T    T    LRK  H +  +  + +V +P +   P
Sbjct: 416 LGTDWDMFRAARNASRAAGRVPVTFVDVTAMSELRKDGHTSVHTIRQGRVLTPEQQADP 474


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,397,845
Number of Sequences: 37544
Number of extensions: 400773
Number of successful extensions: 963
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2315199948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)