Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1621
         (838 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)              141   7e-34
SB_39866| Best HMM Match : SDF (HMM E-Value=0.0021)                    29   6.2  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_2929| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 385

 Score =  141 bits (341), Expect = 7e-34
 Identities = 63/98 (64%), Positives = 80/98 (81%)
 Frame = +1

Query: 1   KTRSNPENNVGLLTLANVEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKHR 180
           KTR NPENNVGL+T A++EVL TLT+DVG++++ LH+VQP GD+N LT ++ AHL LKHR
Sbjct: 25  KTRQNPENNVGLMTTASLEVLVTLTTDVGKLLTTLHKVQPQGDVNFLTAVKKAHLVLKHR 84

Query: 181 QGKNHKMRIVVFVGSPVNTDEKELVN*LKG*RRRKSTV 294
           QGKNHKMRIVVFVGSP+ +DEKE+V   K  ++ K  V
Sbjct: 85  QGKNHKMRIVVFVGSPIESDEKEIVKLAKKLKKEKVNV 122



 Score = 75.8 bits (178), Expect = 4e-14
 Identities = 45/93 (48%), Positives = 56/93 (60%)
 Frame = +3

Query: 171 KTPSGKESQDAHSSFCRFPCQH*RKGTRKLAKRLKKEKVNCDVVSFGEDSENNPLLTTFV 350
           K   GK  +     F   P +   K   KLAK+LKKEKVN DVV+FGE+  N   LT F+
Sbjct: 82  KHRQGKNHKMRIVVFVGSPIESDEKEIVKLAKKLKKEKVNVDVVNFGEEESNTEKLTAFI 141

Query: 351 NTLNGKDTSTGGSHLVSVPAGGCVVLSEALITS 449
           N LNGKD +   SHLV+VP G   +LS AL++S
Sbjct: 142 NILNGKDGNL--SHLVTVPPG--PILSNALVSS 170



 Score = 48.4 bits (110), Expect = 7e-06
 Identities = 39/100 (39%), Positives = 47/100 (47%), Gaps = 16/100 (16%)
 Frame = +2

Query: 500 FRIGVDPNVDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSD---TAVERA 670
           F  GVDPN DPELALALRVSM                            SD     +++A
Sbjct: 188 FEFGVDPNADPELALALRVSMEEQRQRQEEESRATGTPAEGGLTTPVQASDQEEAMLQQA 247

Query: 671 IAMS-----LGR--------DAMELSEEEQIALAMQMSMQ 751
           +AMS     +GR        D   +SEEEQIA AMQ+S+Q
Sbjct: 248 LAMSDSAQDIGRSVPPTPMVDFGSMSEEEQIAYAMQLSLQ 287


>SB_39866| Best HMM Match : SDF (HMM E-Value=0.0021)
          Length = 235

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 512 LQFERRQTRARRACSITTYQRTCYQSLRKHNTASSWHRHKVTSPSRC 372
           L+  +R  R+ R C   + Q   Y S     +  +  RHK+T  ++C
Sbjct: 174 LRLRKRGPRSERDCLRNSSQAAAYGSTCTRKSKINCSRHKITRKAKC 220


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 561  IDTRRANASSGSTLGSTPIRKETNQSQKGXXXXXLSEDLLSKPQKAQH---SLQLAQTQG 391
            +D ++          +T IR + N+SQ+        E++  KP  A+H   SLQ+    G
Sbjct: 1175 VDIKQLKRFFSHVKSNTKIRNDDNESQRMRTGSHGVENIEKKPDSARHQCASLQMLNNNG 1234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,844,887
Number of Sequences: 59808
Number of extensions: 464941
Number of successful extensions: 1048
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1048
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)