Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1621
         (838 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome r...   106   2e-23
U29244-19|AAC71098.1|   95|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>AF067211-11|AAK66019.1|  346|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 10 protein.
          Length = 346

 Score =  106 bits (254), Expect = 2e-23
 Identities = 51/97 (52%), Positives = 73/97 (75%), Gaps = 2/97 (2%)
 Frame = +1

Query: 1   KTRSNPENNVGLLTLAN-VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALKH 177
           K R+NPEN VG+L++AN V+VL++L+++ GR+M K H ++P G  N + GI+IAHLALKH
Sbjct: 40  KLRANPENAVGILSMANSVQVLSSLSTEQGRLMMKNHSIEPFGKCNFIAGIKIAHLALKH 99

Query: 178 RQGKNHKMRIVVFVGSPVNTDE-KELVN*LKG*RRRK 285
           RQ +NHKMR+V+F+GSP+   E  ELV   K  ++ K
Sbjct: 100 RQNRNHKMRVVLFIGSPLEEIEMNELVKIAKKMKKEK 136



 Score = 62.1 bits (144), Expect = 5e-10
 Identities = 34/66 (51%), Positives = 48/66 (72%), Gaps = 1/66 (1%)
 Frame = +3

Query: 255 KLAKRLKKEKVNCDVVSFGE-DSENNPLLTTFVNTLNGKDTSTGGSHLVSVPAGGCVVLS 431
           K+AK++KKEKV CDV+ FGE +S+ +   +TFV+TLNGK+ S  GS L+ VP G    L+
Sbjct: 127 KIAKKMKKEKVLCDVIMFGENESDGHEKFSTFVDTLNGKEGS--GSSLIVVPQGSS--LT 182

Query: 432 EALITS 449
           +AL+ S
Sbjct: 183 DALLQS 188



 Score = 36.7 bits (81), Expect = 0.020
 Identities = 31/104 (29%), Positives = 45/104 (43%)
 Frame = +2

Query: 509 GVDPNVDPELALALRVSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDTAVERAIAMSLG 688
           G+D   DP+LALALRVSM                            +  AV     M +G
Sbjct: 212 GMDVENDPDLALALRVSMEEERARQAAAAAANGGAADSGADAEVAAAAAAVPLE-EMDMG 270

Query: 689 RDAMELSEEEQIALAMQMSMQQEAPG*RELDVSEEYAEVMNDPA 820
                ++EE+Q+  A+++SMQ+ AP   +  V  E  +V   PA
Sbjct: 271 A----MTEEQQLEWALRLSMQENAPA-EQPQVQHEQMDVDGAPA 309


>U29244-19|AAC71098.1|   95|Caenorhabditis elegans Hypothetical
           protein ZK1248.17 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 285 VNCDVVSFGEDSENNPLLTT-FVNTLNG 365
           V+CD  +FG+D  NN  +T  + NT +G
Sbjct: 58  VSCDAFAFGQDDTNNDRITVEWTNTPDG 85


>Z75952-3|CAB00096.1|  286|Caenorhabditis elegans Hypothetical
           protein F55H12.6b protein.
          Length = 286

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 73  TSDVGRIMSKLHRVQPNGDIN 135
           T+DV R++ K HR+ P   IN
Sbjct: 107 TNDVNRVLGKRHRISPTPTIN 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,257,808
Number of Sequences: 27780
Number of extensions: 342311
Number of successful extensions: 904
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2066533546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)