Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1621
         (838 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (...   101   8e-22
At1g28420.1 68414.m03494 homeobox transcription factor, putative...    30   2.2  
At5g44180.1 68418.m05406 homeobox transcription factor, putative...    29   2.9  
At5g22610.1 68418.m02642 F-box family protein contains F-box dom...    28   6.7  
At5g51520.1 68418.m06389 invertase/pectin methylesterase inhibit...    28   8.8  
At5g16040.1 68418.m01875 regulator of chromosome condensation (R...    28   8.8  
At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel...    28   8.8  

>At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A
           (RPN10) identical to multiubiquitin chain binding
           protein (MBP1) SP:P55034, GI:1165206
          Length = 386

 Score =  101 bits (241), Expect = 8e-22
 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%)
 Frame = +1

Query: 1   KTRSNPENNVGLLTLAN--VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALK 174
           KT+SNPEN VG+LT+A   V VL T TSD+G+I++ +H +   G+INL   I+IA LALK
Sbjct: 40  KTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALK 99

Query: 175 HRQGKNHKMRIVVFVGSPVNTDEKELVN*LKG*RRRKSTVML 300
           HRQ KN + RI+VF GSP+  ++K L   + G R +K++V L
Sbjct: 100 HRQNKNQRQRIIVFAGSPIKYEKKALE--IVGKRLKKNSVSL 139



 Score = 48.0 bits (109), Expect = 8e-06
 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
 Frame = +3

Query: 213 FCRFPCQH*RKGTRKLAKRLKKEKVNCDVVSFGE-DSENNP-LLTTFVNTLNGKDTSTGG 386
           F   P ++ +K    + KRLKK  V+ D+V+FGE D E  P  L   +  +N  D    G
Sbjct: 113 FAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNND----G 168

Query: 387 SHLVSVPAGGCVVLSEALITS 449
           SH+V VP+ G   LS+ L+++
Sbjct: 169 SHIVHVPS-GANALSDVLLST 188



 Score = 41.1 bits (92), Expect = 9e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = +2

Query: 500 FRIGVDPNVDPELALALRVSM 562
           F  GVDPN+DPELALALRVSM
Sbjct: 214 FDFGVDPNIDPELALALRVSM 234



 Score = 31.5 bits (68), Expect = 0.72
 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%)
 Frame = +2

Query: 659 VERAIAMSLGRDAM-ELSEEEQ-IALAMQMSMQQEAPG*RELDVSEEYAEVMNDPAFLQS 832
           +++AIAMS+G   M E ++E+Q +ALA+QMSM  E       + +     ++ + AF+ S
Sbjct: 287 LDQAIAMSVGDVNMSEAADEDQDLALALQMSMSGE----ESSEATGAGNNLLGNQAFISS 342

Query: 833 VL 838
           VL
Sbjct: 343 VL 344


>At1g28420.1 68414.m03494 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7 GI:19486
           [Lycopersicon peruvianum]
          Length = 1703

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/42 (30%), Positives = 26/42 (61%)
 Frame = +2

Query: 656 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPG*RELD 781
           A+E+A A  + +++M+L E+EQ+ L    ++ +  P   +LD
Sbjct: 469 AIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLD 510


>At5g44180.1 68418.m05406 homeobox transcription factor, putative
           similar to homeobox transcription factor Hox7/homeotic
           protein Hox7 (GI:19486)   {Lycopersicon peruvianum};
           similar to GP|4165087| Williams-Beuren syndrome deletion
           transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
           domain and Pfam  PF00046: Homeobox domain
          Length = 1694

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +2

Query: 656 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPG*RELD 781
           A ERAIA  + +++MEL E+E++ L    ++ +  P    LD
Sbjct: 436 ANERAIARKIAKESMELIEDERLELMEVAALTKGLPSMLALD 477


>At5g22610.1 68418.m02642 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 472

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 541 ISSTCVDGRTKATSRRRVSS 600
           + +TC+  RTKAT  RRVSS
Sbjct: 341 LETTCIVDRTKATVERRVSS 360


>At5g51520.1 68418.m06389 invertase/pectin methylesterase inhibitor
           family protein low similarity to pectinesterase from
           Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana
           SP|Q42534; contains Pfam profile PF04043: Plant
           invertase/pectin methylesterase inhibitor
          Length = 204

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 503 ERRQTRARRACSITTYQRTCYQSLRKHNT 417
           +  +T  + AC+ TTY   CY+SL  +++
Sbjct: 32  QNHKTFVKTACNSTTYPDKCYKSLSSYSS 60


>At5g16040.1 68418.m01875 regulator of chromosome condensation
           (RCC1) family protein similar to UVB-resistance protein
           UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
           profile PF00415: Regulator of chromosome condensation
           (RCC1)
          Length = 396

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 300 VSFGEDSENNPLLTTFVNTLNGKD---TSTGGSHLVSVPAGG 416
           + FG++ +++ +L   VN L G+D    S GG+H V++   G
Sbjct: 280 LGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDG 321


>At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel,
           putative (CNGC8) similar to cyclic nucleotide and
           calmodulin-regulated ion channel GI:4581207 from
           (Arabidopsis thaliana)
          Length = 728

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -3

Query: 530 GLHWDLLQFERRQTRARRACSITTYQRTCYQSL 432
           G  W +L  ER  T  R AC +    + C Q L
Sbjct: 262 GAFWYMLSVERNDTCLRSACKVQPDPKVCVQIL 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,398,526
Number of Sequences: 28952
Number of extensions: 321820
Number of successful extensions: 890
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1931371200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)