BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1621 (838 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (... 101 8e-22 At1g28420.1 68414.m03494 homeobox transcription factor, putative... 30 2.2 At5g44180.1 68418.m05406 homeobox transcription factor, putative... 29 2.9 At5g22610.1 68418.m02642 F-box family protein contains F-box dom... 28 6.7 At5g51520.1 68418.m06389 invertase/pectin methylesterase inhibit... 28 8.8 At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 28 8.8 At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel... 28 8.8 >At4g38630.1 68417.m05467 26S proteasome regulatory subunit S5A (RPN10) identical to multiubiquitin chain binding protein (MBP1) SP:P55034, GI:1165206 Length = 386 Score = 101 bits (241), Expect = 8e-22 Identities = 52/102 (50%), Positives = 72/102 (70%), Gaps = 2/102 (1%) Frame = +1 Query: 1 KTRSNPENNVGLLTLAN--VEVLATLTSDVGRIMSKLHRVQPNGDINLLTGIRIAHLALK 174 KT+SNPEN VG+LT+A V VL T TSD+G+I++ +H + G+INL I+IA LALK Sbjct: 40 KTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALK 99 Query: 175 HRQGKNHKMRIVVFVGSPVNTDEKELVN*LKG*RRRKSTVML 300 HRQ KN + RI+VF GSP+ ++K L + G R +K++V L Sbjct: 100 HRQNKNQRQRIIVFAGSPIKYEKKALE--IVGKRLKKNSVSL 139 Score = 48.0 bits (109), Expect = 8e-06 Identities = 30/81 (37%), Positives = 45/81 (55%), Gaps = 2/81 (2%) Frame = +3 Query: 213 FCRFPCQH*RKGTRKLAKRLKKEKVNCDVVSFGE-DSENNP-LLTTFVNTLNGKDTSTGG 386 F P ++ +K + KRLKK V+ D+V+FGE D E P L + +N D G Sbjct: 113 FAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNND----G 168 Query: 387 SHLVSVPAGGCVVLSEALITS 449 SH+V VP+ G LS+ L+++ Sbjct: 169 SHIVHVPS-GANALSDVLLST 188 Score = 41.1 bits (92), Expect = 9e-04 Identities = 18/21 (85%), Positives = 19/21 (90%) Frame = +2 Query: 500 FRIGVDPNVDPELALALRVSM 562 F GVDPN+DPELALALRVSM Sbjct: 214 FDFGVDPNIDPELALALRVSM 234 Score = 31.5 bits (68), Expect = 0.72 Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 2/62 (3%) Frame = +2 Query: 659 VERAIAMSLGRDAM-ELSEEEQ-IALAMQMSMQQEAPG*RELDVSEEYAEVMNDPAFLQS 832 +++AIAMS+G M E ++E+Q +ALA+QMSM E + + ++ + AF+ S Sbjct: 287 LDQAIAMSVGDVNMSEAADEDQDLALALQMSMSGE----ESSEATGAGNNLLGNQAFISS 342 Query: 833 VL 838 VL Sbjct: 343 VL 344 >At1g28420.1 68414.m03494 homeobox transcription factor, putative similar to homeobox transcription factor Hox7 GI:19486 [Lycopersicon peruvianum] Length = 1703 Score = 29.9 bits (64), Expect = 2.2 Identities = 13/42 (30%), Positives = 26/42 (61%) Frame = +2 Query: 656 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPG*RELD 781 A+E+A A + +++M+L E+EQ+ L ++ + P +LD Sbjct: 469 AIEKATARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLD 510 >At5g44180.1 68418.m05406 homeobox transcription factor, putative similar to homeobox transcription factor Hox7/homeotic protein Hox7 (GI:19486) {Lycopersicon peruvianum}; similar to GP|4165087| Williams-Beuren syndrome deletion transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT domain and Pfam PF00046: Homeobox domain Length = 1694 Score = 29.5 bits (63), Expect = 2.9 Identities = 15/42 (35%), Positives = 25/42 (59%) Frame = +2 Query: 656 AVERAIAMSLGRDAMELSEEEQIALAMQMSMQQEAPG*RELD 781 A ERAIA + +++MEL E+E++ L ++ + P LD Sbjct: 436 ANERAIARKIAKESMELIEDERLELMEVAALTKGLPSMLALD 477 >At5g22610.1 68418.m02642 F-box family protein contains F-box domain Pfam:PF00646 Length = 472 Score = 28.3 bits (60), Expect = 6.7 Identities = 12/20 (60%), Positives = 15/20 (75%) Frame = +1 Query: 541 ISSTCVDGRTKATSRRRVSS 600 + +TC+ RTKAT RRVSS Sbjct: 341 LETTCIVDRTKATVERRVSS 360 >At5g51520.1 68418.m06389 invertase/pectin methylesterase inhibitor family protein low similarity to pectinesterase from Lycopersicon esculentum SP|Q43143, Arabidopsis thaliana SP|Q42534; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor Length = 204 Score = 27.9 bits (59), Expect = 8.8 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 503 ERRQTRARRACSITTYQRTCYQSLRKHNT 417 + +T + AC+ TTY CY+SL +++ Sbjct: 32 QNHKTFVKTACNSTTYPDKCYKSLSSYSS 60 >At5g16040.1 68418.m01875 regulator of chromosome condensation (RCC1) family protein similar to UVB-resistance protein UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam profile PF00415: Regulator of chromosome condensation (RCC1) Length = 396 Score = 27.9 bits (59), Expect = 8.8 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%) Frame = +3 Query: 300 VSFGEDSENNPLLTTFVNTLNGKD---TSTGGSHLVSVPAGG 416 + FG++ +++ +L VN L G+D S GG+H V++ G Sbjct: 280 LGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTRDG 321 >At1g19780.1 68414.m02473 cyclic nucleotide-regulated ion channel, putative (CNGC8) similar to cyclic nucleotide and calmodulin-regulated ion channel GI:4581207 from (Arabidopsis thaliana) Length = 728 Score = 27.9 bits (59), Expect = 8.8 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -3 Query: 530 GLHWDLLQFERRQTRARRACSITTYQRTCYQSL 432 G W +L ER T R AC + + C Q L Sbjct: 262 GAFWYMLSVERNDTCLRSACKVQPDPKVCVQIL 294 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,398,526 Number of Sequences: 28952 Number of extensions: 321820 Number of successful extensions: 890 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 861 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 888 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1931371200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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