Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1620
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    37   1e-04
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       28   0.082
EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive pep...    26   0.33 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    25   0.76 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    25   0.76 
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    25   0.76 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   4.1  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   7.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.1  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.1  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 37.1 bits (82), Expect = 1e-04
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 533 TYDRGDIQASESCQCDNGGSCSS--ESTNCICPTGYTGSYCDTRI 661
           +Y + +I   +S  C NGG+C     S +C CP G+ G  C+  +
Sbjct: 179 SYCQTEINECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCELNV 223



 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +2

Query: 551 IQASESCQCDNGGSCSSESTN--CICPTGYTGSYC 649
           I   +S  C NG +C   +T+  C CP GYTG  C
Sbjct: 62  INLCDSSPCLNGATCQDHTTHYTCHCPYGYTGKDC 96



 Score = 34.3 bits (75), Expect = 0.001
 Identities = 19/47 (40%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 527 CNTYDRGDIQASESCQCDNGGSCSS--ESTNCICPTGYTGSYCDTRI 661
           C T D    + S    C NGG+C     S  C C  G+TGS C  RI
Sbjct: 20  CQTNDEDCTETS----CMNGGTCIDGINSYICTCKPGFTGSNCQNRI 62



 Score = 33.5 bits (73), Expect = 0.002
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +2

Query: 581 NGGSCSS--ESTNCICPTGYTGSYCDTRI 661
           N G+C     S  C C  GY+GSYC T I
Sbjct: 157 NNGTCEDIGNSHRCHCSDGYSGSYCQTEI 185



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = +2

Query: 575 CDNGGSCSS--ESTNCICPTGYTGSYCDTRI 661
           C NGG+C     S +C CP+G  G  C+  +
Sbjct: 231 CQNGGTCHDLVNSFSCSCPSGTLGYICEINV 261



 Score = 31.1 bits (67), Expect = 0.009
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +2

Query: 575 CDNGGSC--SSESTNCICPTGYTGSYCDTRIAS 667
           C+N  +C  +     C+C  G+TG  CD  + S
Sbjct: 108 CENQATCVQNKNQYQCLCGVGWTGKVCDVEMVS 140



 Score = 30.3 bits (65), Expect = 0.015
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
 Frame = +2

Query: 575 CDNGGSCSSE--STNCICPTGYTGSYCDTRIASYLMSP 682
           C N G+C  +     C CP G+ G  C+  I   L +P
Sbjct: 269 CHNNGTCLDKVGGFECKCPPGFVGPRCEGDINECLSNP 306



 Score = 30.3 bits (65), Expect = 0.015
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = +2

Query: 575 CDNGGSCSS--ESTNCICPTGYTGSYCD 652
           C NGG C++      C CP G+ G  C+
Sbjct: 347 CQNGGVCTTIHAGHKCTCPEGFYGKNCE 374



 Score = 28.7 bits (61), Expect = 0.047
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
 Frame = +2

Query: 545 GDIQASESCQCDNGGSCSS----ESTNCICPTGYTGSYCDTRIASYLMSP 682
           GDI    S  C N G+          +C C  G+ G +C++++     SP
Sbjct: 297 GDINECLSNPCSNAGTLDCVQLVNDYHCNCKLGFMGRHCESKVNFCATSP 346



 Score = 27.9 bits (59), Expect = 0.082
 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 3/51 (5%)
 Frame = +2

Query: 527 CNTYDRGDIQASESCQCDNGGS---CSSESTNCICPTGYTGSYCDTRIASY 670
           CN     DI  S  C C +G S   C +E   C       G  C   I SY
Sbjct: 156 CNNGTCEDIGNSHRCHCSDGYSGSYCQTEINECDSAPCQNGGTCLDLIGSY 206



 Score = 27.9 bits (59), Expect = 0.082
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = +2

Query: 563 ESCQCDNGGSCSSESTN---CICPTGYTGSYCD 652
           +S  C NGG C         C CP+G  G+ C+
Sbjct: 381 DSNPCQNGGVCRISDGGGYICDCPSGTNGTNCE 413



 Score = 25.4 bits (53), Expect = 0.44
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 602 ESTNCICPTGYTGSYCDT 655
           +S  C CP G++G  C T
Sbjct: 5   DSYTCTCPLGFSGINCQT 22



 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +2

Query: 614 CICPTGYTGSYCD 652
           C CP  +TG  C+
Sbjct: 441 CYCPPKHTGKNCE 453


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 27.9 bits (59), Expect = 0.082
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 3/58 (5%)
 Frame = +2

Query: 518 IQECNTYDRGDIQASESCQCDNGGSCSS---ESTNCICPTGYTGSYCDTRIASYLMSP 682
           ++ C     G  + S    C   G C +       C C  G+TG YC   I    ++P
Sbjct: 19  VESCIAVGVGSGRNSAPSICGEHGHCVNLPGVGHRCQCQPGFTGKYCHENINDCKVNP 76


>EF222292-1|ABN79652.1|  354|Tribolium castaneum cardioactive
           peptide receptor 2 protein.
          Length = 354

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 242 GHCP-QPMDRHSDRPPRGFRLHGD 310
           GH P +  D H DRPPR F    D
Sbjct: 244 GHIPIRQCDDHRDRPPRHFHEEHD 267


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 617 ICPTGYTGSYCDTRIASYLMSP 682
           + P GY+GS CD   A   M P
Sbjct: 124 LSPGGYSGSLCDQGFAQQPMFP 145


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  AATPVTDGIIMYCAESSRGYGGFTSLTV 171
           AA  +T+  +M+C E + G   F +LTV
Sbjct: 231 AAEVLTNPKLMFCDEPTSGLDSFMALTV 258


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  AATPVTDGIIMYCAESSRGYGGFTSLTV 171
           AA  +T+  +M+C E + G   F +LTV
Sbjct: 231 AAEVLTNPKLMFCDEPTSGLDSFMALTV 258


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 473 QHDILNASAEAAADAGVRVHYH 408
           QH +L  +A AAA   V + YH
Sbjct: 174 QHGLLLTAAVAAAGPSVDLSYH 195


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 498 SLCRRRCYSTRH 463
           +LCR  C+ST++
Sbjct: 83  NLCRSECFSTKY 94


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 390 RPRTSESRTGCFQPVYPNVSRSCVLS*SPWRRNPRGGRSECRS 262
           RP  S  RT  F+P    VS S   S  P    P+G  +  R+
Sbjct: 46  RPNWSYLRTPQFEPQQFEVSLSENRSHEPEMERPKGASNGKRA 88


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = -3

Query: 390 RPRTSESRTGCFQPVYPNVSRSCVLS*SPWRRNPRGGRSECRS 262
           RP  S  RT  F+P    VS S   S  P    P+G  +  R+
Sbjct: 66  RPNWSYLRTPQFEPQQFEVSLSENRSHEPEMERPKGASNGKRA 108


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,195
Number of Sequences: 336
Number of extensions: 3336
Number of successful extensions: 23
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)