Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1620
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 29 0.63
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 1.9
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 27 3.3
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|... 25 7.7
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 25 7.7
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 25 7.7
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 7.7
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo... 25 7.7
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc... 25 7.7
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |... 25 7.7
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 29.1 bits (62), Expect = 0.63
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 201 PWIRKHSRGAYK*QAIARNQWIDI 272
P +RK +R YK Q+ RN W+D+
Sbjct: 44 PIVRKETRLLYKIQSFFRNPWLDV 67
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.5 bits (58), Expect = 1.9
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -2
Query: 490 STALLFNTTSLMH---PLKPPLTPALGFTTTVESSTPPTNI 377
S++ +NT+SL+ P PL+ A T T SSTP T++
Sbjct: 271 SSSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV 311
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 472 NTTSLMHPLKPPLTPALGFTTTVESSTPPTNIGVSN 365
N+T+ PLT TTT SSTP +++ +N
Sbjct: 296 NSTTATSASSTPLTSVNSTTTTSASSTPLSSVSSAN 331
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = +1
Query: 190 FRYDLGSGSTPVVL--TSDRPLPATNGSTFRSPASRIPSPWRST 315
FR D S T L T + P+ +TN S R + PW ST
Sbjct: 493 FRSDTASPETIAGLGDTKNDPVVSTNNSVSRITVANSSPPWNST 536
>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 997
Score = 25.4 bits (53), Expect = 7.7
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Frame = +3
Query: 264 IDIQIARLADSVSMEINLVRSFERRLDRPAESIRFETPMFVGGVDDSTVVVNPNAGVSGG 443
IDI+I + + +++++ S RLDRPA + + D +T +G SGG
Sbjct: 177 IDIRI--IGNDAGEKLSILSSTLARLDRPAPNYGIDNYN-----DFNTFYYQAASGTSGG 229
Query: 444 FSGC-IKDVVLNSNAVDINS 500
SG + D+ + AV +NS
Sbjct: 230 SSGSPVLDI--SGAAVALNS 247
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 25.4 bits (53), Expect = 7.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 605 IHSNRNLRYRIGRTPTPEYRRG 540
I S ++ +Y +T PE+RRG
Sbjct: 136 IDSKKDFKYNFPKTQAPEWRRG 157
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 25.4 bits (53), Expect = 7.7
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 243 PVTCKHHGSASGSKVVTELKSSISNGQ 163
PVT + + +VVTEL+S +NG+
Sbjct: 450 PVTLAENAGLNAIQVVTELRSRHANGE 476
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 7.7
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 460 LMHPLKPPLTPALGFTTTVESSTPPTNI 377
+M P KPPL+P G + S T PTN+
Sbjct: 172 IMSPQKPPLSPFGGSRDRLVSET-PTNM 198
>SPAC23D3.13c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1616
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 499 EFMSTALLFNTTSLMHPLKPPLTPALGFTTTVESSTPPTNI--GVSNRMLSAG 347
EF+ + L T+S +HP++ P F + S+ ++ +NR +S G
Sbjct: 712 EFLESLLAVITSSSVHPIQTLTAPRQSFNEDLLSANTKNSVYKTSANRSISGG 764
>SPBC30D10.10c |tor1||phosphatidylinositol kinase
Tor1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2335
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +2
Query: 185 LSSVTTLDPEALPWCLQVTGHCPQPMDRHSDRPPRGFRL-HGDQLSTQ 325
LS + + P+AL + L V+ P +HS + L H D L Q
Sbjct: 1760 LSDIGRVHPQALVYSLTVSSKSTNPQQKHSAKSIMDSMLSHSDTLVRQ 1807
>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 661
Score = 25.4 bits (53), Expect = 7.7
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -2
Query: 484 ALLFNTTSLMHPLKPPLTP 428
AL+F+ M+P+K PLTP
Sbjct: 537 ALIFSLAQGMNPMKMPLTP 555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,783,741
Number of Sequences: 5004
Number of extensions: 56122
Number of successful extensions: 197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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