Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1620
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0471 - 18121023-18121213,18121954-18122080,18122221-181222... 33 0.16
05_05_0323 - 24098962-24099866,24099941-24100442 30 2.0
10_08_0898 + 21424379-21424792,21424974-21425723 29 2.6
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810... 29 2.6
08_02_1364 - 26415278-26415319,26415399-26415518,26415739-264158... 29 3.4
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552... 28 6.0
09_02_0626 + 11352690-11353078,11353106-11354006 28 6.0
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578... 28 6.0
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367... 28 6.0
06_03_1460 - 30312640-30313116,30313457-30313708,30313808-303139... 28 7.9
04_03_0372 + 15068405-15070000 28 7.9
>11_04_0471 -
18121023-18121213,18121954-18122080,18122221-18122253,
18122969-18123009,18123415-18123484,18123626-18123744,
18123876-18123942,18124735-18124809,18125023-18125050,
18125130-18125179,18125679-18125741,18125829-18125870,
18126000-18126078,18127233-18127368,18128013-18128517,
18129238-18129372
Length = 586
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/42 (38%), Positives = 26/42 (61%)
Frame = +3
Query: 240 QAIARNQWIDIQIARLADSVSMEINLVRSFERRLDRPAESIR 365
Q+ AR + ++ Q+A L D +SME+ L++ E L R + IR
Sbjct: 309 QSEARTRELEKQVANLGDGLSMEVKLMKRREEMLVRKEQEIR 350
>05_05_0323 - 24098962-24099866,24099941-24100442
Length = 468
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 464 ILNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPDAFSRSIQTSLEAAY 318
+L +A AAA+ GVR+ +V S H R+ + F R++ T +EA +
Sbjct: 53 LLGGAAAAAAEGGVRLEAIPNVVPSEH-GRAGDMLGFVRAVYTRMEAPF 100
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = -1
Query: 470 HDILNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPDAFSRSIQTSL 330
HD ASA AAA AG H+H + E P A S QTS+
Sbjct: 83 HDFFPASAAAAA-AGDHGHHHHHHIGGMGEPSGATPSATSSDHQTSM 128
>05_06_0276 +
26878732-26879574,26879920-26880387,26880800-26881021,
26881153-26881278,26881309-26881573,26881719-26881936
Length = 713
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 244 PLPATNGSTFRSPASRIPSPWRST*YAASRDVWIDRLKASGSRLRCSWAESTIP 405
P+ +T+ RSP R SP RS + R DR+K + SW+ S P
Sbjct: 49 PVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQSWSRSPSP 102
>08_02_1364 -
26415278-26415319,26415399-26415518,26415739-26415825,
26416273-26416443,26416535-26416738
Length = 207
Score = 29.1 bits (62), Expect = 3.4
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Frame = -1
Query: 461 LNASAEAAADAGVRVHYHGGIVDSAHEHRSLE--PDAFSRSIQTSLEAAY*VDLHGDGIR 288
+ ASA AAA A + H H ++ A S+E A R+ +T L+AA + D +
Sbjct: 1 MEASASAAAAAALWGHKHLPLLARASSKESVEYILQALWRTRRTGLDAADRAVVR-DMLH 59
Query: 287 EAGDLNVDPLV 255
A D ++DPL+
Sbjct: 60 LASDADLDPLL 70
>12_02_0137 +
14153603-14153629,14154136-14154586,14155066-14155260,
14155366-14155628,14155964-14156104,14156188-14156283,
14156672-14156749,14157134-14157194,14157324-14157511,
14158441-14158569
Length = 542
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 22 SAFLAINAPPPSRSMKMSLKIRAATPVTDGIIMYCAESSR 141
SA +A+ +PPP L++ AA V G+++ E R
Sbjct: 131 SAAVALASPPPGWVQGEDLRLNAAAAVASGVVLGLHEDRR 170
>09_02_0626 + 11352690-11353078,11353106-11354006
Length = 429
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 440 AADAGVRVHYHGGIVD--SAHEHRSLEPDAFSRSIQTSLEA 324
A D RV GI+D +AHE R+ E DA R+ +LEA
Sbjct: 33 AKDLAERVRDARGILDVAAAHERRASEADASLRAWTAALEA 73
>08_02_0823 +
21557111-21557292,21557391-21557473,21557722-21557810,
21557985-21558058,21558264-21558314,21558406-21558482,
21560206-21560900
Length = 416
Score = 28.3 bits (60), Expect = 6.0
Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = -1
Query: 602 HSNRNLRYRIGRTPTPEYRRGRTCCTLECSTINR*VYVDGVAIQHDILNASAEAAADAGV 423
H N RIGR +Y T T E + + Y D AI+H LNA + +
Sbjct: 162 HHNGKWEARIGRVFGNKYLYLGTYATQEEAAV---AY-DIAAIEHRGLNAVTNFDINLYI 217
Query: 422 RVHYHGGI-VDSAHEHRSLEPDAFSRSIQTSLE 327
R YHG SA ++E D F+ +I +L+
Sbjct: 218 R-WYHGSCRSSSAAAATTIEDDDFAEAIAAALQ 249
>03_05_0346 +
23335753-23335854,23336268-23336473,23336530-23336705,
23336832-23337064,23337546-23337963,23338045-23338262,
23338905-23339168
Length = 538
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 264 IDIQIARLADSV-SMEINLVRSFERRLDRPAESIRFETPMFVGGVDDSTV 410
+D QIA + V S NL ++ E +LD + IR E P++V + S V
Sbjct: 183 VDPQIAPMPGYVLSRGTNLSQAHEEKLDMLVQEIRPEIPLYVTTMKHSNV 232
>06_03_1460 -
30312640-30313116,30313457-30313708,30313808-30313938,
30314037-30314322
Length = 381
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = -1
Query: 368 EPDAFSRSIQTSLEAAY*VDLHGDGIREAGDLNVDPLVAGNGLSLVSTTG 219
E +AF S+ ++ AA +L+G G R+ G +NV P+ + + + TG
Sbjct: 206 EVEAFYTSLISNYSAAI-TELYGMGARKFGIINVGPVGCVPSVRVANATG 254
>04_03_0372 + 15068405-15070000
Length = 531
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 179 PFRTVSEVKPPYPRDDSAQYMMMPSVTGVAA--LIFSDIFMERDGGGA 42
P+R + ++PP+PR+ +P G A + +F+ DGGGA
Sbjct: 153 PYR-YTVLRPPHPRESVQLLPPLPPPPGGGAGKHVVERVFLPEDGGGA 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,275
Number of Sequences: 37544
Number of extensions: 474367
Number of successful extensions: 1704
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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