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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1620
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0471 - 18121023-18121213,18121954-18122080,18122221-181222...    33   0.16 
05_05_0323 - 24098962-24099866,24099941-24100442                       30   2.0  
10_08_0898 + 21424379-21424792,21424974-21425723                       29   2.6  
05_06_0276 + 26878732-26879574,26879920-26880387,26880800-268810...    29   2.6  
08_02_1364 - 26415278-26415319,26415399-26415518,26415739-264158...    29   3.4  
12_02_0137 + 14153603-14153629,14154136-14154586,14155066-141552...    28   6.0  
09_02_0626 + 11352690-11353078,11353106-11354006                       28   6.0  
08_02_0823 + 21557111-21557292,21557391-21557473,21557722-215578...    28   6.0  
03_05_0346 + 23335753-23335854,23336268-23336473,23336530-233367...    28   6.0  
06_03_1460 - 30312640-30313116,30313457-30313708,30313808-303139...    28   7.9  
04_03_0372 + 15068405-15070000                                         28   7.9  

>11_04_0471 -
           18121023-18121213,18121954-18122080,18122221-18122253,
           18122969-18123009,18123415-18123484,18123626-18123744,
           18123876-18123942,18124735-18124809,18125023-18125050,
           18125130-18125179,18125679-18125741,18125829-18125870,
           18126000-18126078,18127233-18127368,18128013-18128517,
           18129238-18129372
          Length = 586

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/42 (38%), Positives = 26/42 (61%)
 Frame = +3

Query: 240 QAIARNQWIDIQIARLADSVSMEINLVRSFERRLDRPAESIR 365
           Q+ AR + ++ Q+A L D +SME+ L++  E  L R  + IR
Sbjct: 309 QSEARTRELEKQVANLGDGLSMEVKLMKRREEMLVRKEQEIR 350


>05_05_0323 - 24098962-24099866,24099941-24100442
          Length = 468

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = -1

Query: 464 ILNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPDAFSRSIQTSLEAAY 318
           +L  +A AAA+ GVR+     +V S H  R+ +   F R++ T +EA +
Sbjct: 53  LLGGAAAAAAEGGVRLEAIPNVVPSEH-GRAGDMLGFVRAVYTRMEAPF 100


>10_08_0898 + 21424379-21424792,21424974-21425723
          Length = 387

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -1

Query: 470 HDILNASAEAAADAGVRVHYHGGIVDSAHEHRSLEPDAFSRSIQTSL 330
           HD   ASA AAA AG   H+H   +    E     P A S   QTS+
Sbjct: 83  HDFFPASAAAAA-AGDHGHHHHHHIGGMGEPSGATPSATSSDHQTSM 128


>05_06_0276 +
           26878732-26879574,26879920-26880387,26880800-26881021,
           26881153-26881278,26881309-26881573,26881719-26881936
          Length = 713

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/54 (33%), Positives = 25/54 (46%)
 Frame = +1

Query: 244 PLPATNGSTFRSPASRIPSPWRST*YAASRDVWIDRLKASGSRLRCSWAESTIP 405
           P+ +T+    RSP  R  SP RS   +  R    DR+K      + SW+ S  P
Sbjct: 49  PVKSTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQSWSRSPSP 102


>08_02_1364 -
           26415278-26415319,26415399-26415518,26415739-26415825,
           26416273-26416443,26416535-26416738
          Length = 207

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = -1

Query: 461 LNASAEAAADAGVRVHYHGGIVDSAHEHRSLE--PDAFSRSIQTSLEAAY*VDLHGDGIR 288
           + ASA AAA A +  H H  ++  A    S+E    A  R+ +T L+AA    +  D + 
Sbjct: 1   MEASASAAAAAALWGHKHLPLLARASSKESVEYILQALWRTRRTGLDAADRAVVR-DMLH 59

Query: 287 EAGDLNVDPLV 255
            A D ++DPL+
Sbjct: 60  LASDADLDPLL 70


>12_02_0137 +
           14153603-14153629,14154136-14154586,14155066-14155260,
           14155366-14155628,14155964-14156104,14156188-14156283,
           14156672-14156749,14157134-14157194,14157324-14157511,
           14158441-14158569
          Length = 542

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 22  SAFLAINAPPPSRSMKMSLKIRAATPVTDGIIMYCAESSR 141
           SA +A+ +PPP       L++ AA  V  G+++   E  R
Sbjct: 131 SAAVALASPPPGWVQGEDLRLNAAAAVASGVVLGLHEDRR 170


>09_02_0626 + 11352690-11353078,11353106-11354006
          Length = 429

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 440 AADAGVRVHYHGGIVD--SAHEHRSLEPDAFSRSIQTSLEA 324
           A D   RV    GI+D  +AHE R+ E DA  R+   +LEA
Sbjct: 33  AKDLAERVRDARGILDVAAAHERRASEADASLRAWTAALEA 73


>08_02_0823 +
           21557111-21557292,21557391-21557473,21557722-21557810,
           21557985-21558058,21558264-21558314,21558406-21558482,
           21560206-21560900
          Length = 416

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 29/93 (31%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
 Frame = -1

Query: 602 HSNRNLRYRIGRTPTPEYRRGRTCCTLECSTINR*VYVDGVAIQHDILNASAEAAADAGV 423
           H N     RIGR    +Y    T  T E + +    Y D  AI+H  LNA      +  +
Sbjct: 162 HHNGKWEARIGRVFGNKYLYLGTYATQEEAAV---AY-DIAAIEHRGLNAVTNFDINLYI 217

Query: 422 RVHYHGGI-VDSAHEHRSLEPDAFSRSIQTSLE 327
           R  YHG     SA    ++E D F+ +I  +L+
Sbjct: 218 R-WYHGSCRSSSAAAATTIEDDDFAEAIAAALQ 249


>03_05_0346 +
           23335753-23335854,23336268-23336473,23336530-23336705,
           23336832-23337064,23337546-23337963,23338045-23338262,
           23338905-23339168
          Length = 538

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +3

Query: 264 IDIQIARLADSV-SMEINLVRSFERRLDRPAESIRFETPMFVGGVDDSTV 410
           +D QIA +   V S   NL ++ E +LD   + IR E P++V  +  S V
Sbjct: 183 VDPQIAPMPGYVLSRGTNLSQAHEEKLDMLVQEIRPEIPLYVTTMKHSNV 232


>06_03_1460 -
           30312640-30313116,30313457-30313708,30313808-30313938,
           30314037-30314322
          Length = 381

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = -1

Query: 368 EPDAFSRSIQTSLEAAY*VDLHGDGIREAGDLNVDPLVAGNGLSLVSTTG 219
           E +AF  S+ ++  AA   +L+G G R+ G +NV P+     + + + TG
Sbjct: 206 EVEAFYTSLISNYSAAI-TELYGMGARKFGIINVGPVGCVPSVRVANATG 254


>04_03_0372 + 15068405-15070000
          Length = 531

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 179 PFRTVSEVKPPYPRDDSAQYMMMPSVTGVAA--LIFSDIFMERDGGGA 42
           P+R  + ++PP+PR+       +P   G  A   +   +F+  DGGGA
Sbjct: 153 PYR-YTVLRPPHPRESVQLLPPLPPPPGGGAGKHVVERVFLPEDGGGA 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,697,275
Number of Sequences: 37544
Number of extensions: 474367
Number of successful extensions: 1704
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1703
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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