Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1620
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42620.1 68418.m05188 expressed protein                             32   0.31 
At4g18810.1 68417.m02777 expressed protein similar to UV-B and o...    31   0.94 
At1g17910.1 68414.m02217 wall-associated kinase, putative contai...    30   1.2  
At1g16160.1 68414.m01936 protein kinase family protein contains ...    30   1.2  
At2g22500.1 68415.m02669 mitochondrial substrate carrier family ...    28   5.0  
At3g15353.1 68416.m01944 metallothionein protein, putative             28   6.6  
At1g19390.1 68414.m02412 wall-associated kinase, putative simila...    28   6.6  
At2g18380.1 68415.m02141 zinc finger (GATA type) family protein        27   8.8  
At1g16120.1 68414.m01932 wall-associated kinase, putative contai...    27   8.8  

>At5g42620.1 68418.m05188 expressed protein
          Length = 841

 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +2

Query: 560 SESC--QCDNGGSCSSESTNCICPTGYTGSYCDTRI 661
           + SC   C+  G C+++   CIC  G+TG  C T I
Sbjct: 631 NRSCPNNCNGHGKCTTQGV-CICENGFTGIDCSTAI 665


>At4g18810.1 68417.m02777 expressed protein similar to UV-B and
           ozone similarly regulated protein 1 UOS1 [Pisum sativum]
           GI:20339364
          Length = 596

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +3

Query: 384 VGGVDDSTVVVNPNAGVSGGFSGCIKDVVLNSN 482
           +GGV +S  +V+  AG +GG +G  K +V  +N
Sbjct: 276 MGGVSESNFIVDLTAGENGGPTGIFKGIVSTTN 308


>At1g17910.1 68414.m02217 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 764

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/55 (27%), Positives = 25/55 (45%)
 Frame = +2

Query: 479 QRRRHKLID*SSNIQECNTYDRGDIQASESCQCDNGGSCSSESTNCICPTGYTGS 643
           Q + H  +  S + Q     D+G  + +  C CDN  +      +C C +GY G+
Sbjct: 280 QTKNHSFLQ-SLDCQNRGELDKGK-KRTRQCTCDNHIASGMGYASCACASGYKGN 332


>At1g16160.1 68414.m01936 protein kinase family protein contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 711

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 533 TYDRGDIQASESCQCDNGGSCSSESTNCICPTGYTGS 643
           TY  G   + +SC C+ G        NC C  G+TG+
Sbjct: 254 TYS-GSYLSGDSCLCEYGYFSEMSYRNCYCSLGFTGN 289


>At2g22500.1 68415.m02669 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 313

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 451 PLKPPLTPALGFTTTVESSTPPTNIGV 371
           P++  L PAL F T+   + PP  +GV
Sbjct: 38  PIQTNLRPALAFQTSTTVNAPPLRVGV 64


>At3g15353.1 68416.m01944 metallothionein protein, putative
          Length = 69

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 497 LID*SSNIQECNTYDRGDIQASESCQCDNGGSCSSESTNCICP 625
           +++   + +E    D G  + + +C+C  G SCS  +  C CP
Sbjct: 27  IVETQESYKEAMIMDVGAEENNANCKCKCGSSCSCVNCTC-CP 68


>At1g19390.1 68414.m02412 wall-associated kinase, putative similar
           to GB:CAB42872 from [Arabidopsis thaliana] (Plant Mol.
           Biol. 39 (6), 1189-1196 (1999))
          Length = 788

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = +2

Query: 509 SSNIQECNTYDRG--DIQASESCQCDNGGSCSSESTNCICPTGYTGS 643
           S + +    YD    +I+   SC C+N     ++  NC C  GY G+
Sbjct: 284 SLSCKNTKEYDNSTYNIKLVTSCICNNVTISGTDYANCGCSQGYEGN 330


>At2g18380.1 68415.m02141 zinc finger (GATA type) family protein 
          Length = 207

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = -3

Query: 384 RTSESRTGCFQPVYPNVSRSCVLS*SP-WRRNPRGGRSECRSIG 256
           +TS  + G      P    SC  + +P WR  P+G +S C + G
Sbjct: 76  KTSSYKKGGVAHSLPRRCASCDTTSTPLWRNGPKGPKSLCNACG 119


>At1g16120.1 68414.m01932 wall-associated kinase, putative contains
           similarity to wall-associated kinase 4 GI:3355308 from
           [Arabidopsis thaliana]
          Length = 730

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 530 NTYDRGDIQASESCQCDNGGSCSSESTNCICPTGYTGS 643
           N   +G   + ++C C+          NC C  GYTG+
Sbjct: 269 NMSRKGSGFSDDNCSCEYDYFSGMSYRNCYCDYGYTGN 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,311,671
Number of Sequences: 28952
Number of extensions: 330639
Number of successful extensions: 1064
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)