Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1618
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7683| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.89 
SB_47383| Best HMM Match : LON (HMM E-Value=1.3)                       29   2.7  

>SB_7683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 488 SVKAKQTCQRQCHSRXTPFIVYKMNKHKFVFKECLINHNSFI 363
           +VK   TC  +  S+   F V K+ K KF+ K   I H S++
Sbjct: 2   TVKTSDTCSSRRRSQLVSFSVLKLTKQKFLRKP-FIRHTSYV 42


>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
          Length = 1528

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -1

Query: 304 FSLNIIFLTITNLQLFFNFIIFREMLKNYNCRFKIY*MSNSSSIQKAISNEI 149
           ++ + IF  ITN+  F NF++ +  LK    +   Y +   + I+K++ + +
Sbjct: 333 YTESCIFQAITNIPFFKNFLVIKSFLKWKEIKNFTYFLKIEAQIEKSLIHNV 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,794,499
Number of Sequences: 59808
Number of extensions: 341000
Number of successful extensions: 612
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)