Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    25   0.56 
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   3.0  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.3  
AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical pro...    21   6.9  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.2  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 283 LTITNLQLFFNFIIFREMLKNYNCRFK 203
           L IT+L    ++ +F EM   ++CRFK
Sbjct: 54  LKITDLDPSADYCLFLEMTLAHHCRFK 80


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 293 YYFFNDNQPTIIF*FHYIP 237
           Y FF +N+P +   F Y P
Sbjct: 145 YVFFVENEPILYLIFSYCP 163


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 5/14 (35%), Positives = 11/14 (78%)
 Frame = +1

Query: 628 IIKGGNLCIWTKNV 669
           ++ GG +C+W++ V
Sbjct: 504 LVLGGEVCLWSEQV 517


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = +2

Query: 332 FWGRAKFFNWK 364
           FWG  ++ NW+
Sbjct: 493 FWGTTEYHNWR 503


>AM712903-1|CAN84642.1|  148|Tribolium castaneum hypothetical
           protein protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 24  LKDMTNLLD*IMYT*CGKKNEFSV*KKNTKIQKLQ 128
           ++D  NL    + T C    +FS   K    +K+Q
Sbjct: 27  MEDANNLTQSTILTTCESNTDFSFGSKTIDFRKIQ 61


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 385 KHSLKTNLCLFILYTIKGVN 444
           +  L  +LC  I+Y+  GVN
Sbjct: 43  QEDLPVDLCTHIVYSFIGVN 62


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,406
Number of Sequences: 336
Number of extensions: 3490
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)