Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        27   3.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   5.7  
SPBC1703.08c |||5-formyltetrahydrofolate cyclo-ligase|Schizosacc...    26   5.7  
SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   9.9  

>SPAC27E2.12 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 76

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +3

Query: 513 CVVCYIRLVCK*YC 554
           CVVC++ ++C+ YC
Sbjct: 35  CVVCFVSVLCRLYC 48


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 4/67 (5%)
 Frame = -2

Query: 189 VIHPQYKRLFRTRLMNNTKAIVIFVFWCFFF----KQKTHFSCRIMYT*FSLTNLSYLLE 22
           ++  Q++RL      ++T  I  F +W FFF         F   I    +    + +   
Sbjct: 51  LVSSQFRRLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCF 110

Query: 21  FFYFQTF 1
           FFYF  F
Sbjct: 111 FFYFSLF 117


>SPBC1703.08c |||5-formyltetrahydrofolate
           cyclo-ligase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 234 SRNIMKLKNNCRLVIVKKIIFNENL 308
           SR IM  + +C L+IV  + F+E L
Sbjct: 111 SRKIMDDETDCELIIVPGVAFDEKL 135


>SPAC22F8.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 133

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 480 LNTAFNFVSRPCVVCYIR 533
           LNT+F+F S  C++C+ +
Sbjct: 17  LNTSFSFSSLLCILCFYK 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,181
Number of Sequences: 5004
Number of extensions: 53505
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)