Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0896 + 24100015-24100240,24100910-24101277,24102144-241023...    28   7.8  

>12_02_0896 +
           24100015-24100240,24100910-24101277,24102144-24102380,
           24102461-24102754
          Length = 374

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -3

Query: 602 TRKFYIFLIIKNLNFKTISFTYKSNITHNTRSRDKIKCSVK-AKQTCQRQCHSRLTPFIV 426
           T K  + ++ KN          ++ +T   R R+     +K  ++  +R  H  +T  +V
Sbjct: 263 TDKAAVDIVFKNPRAGIAKRLVRAALTEAARKREMRYTDIKHIERGSRRNFHDDITVVVV 322

Query: 425 YKMNKHKFVFKECLINHNSF 366
           Y ++ HK   +  L N NSF
Sbjct: 323 Y-LDHHKHGVRPNLGNRNSF 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,500,907
Number of Sequences: 37544
Number of extensions: 249039
Number of successful extensions: 448
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)