BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1617 (673 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 12_02_0896 + 24100015-24100240,24100910-24101277,24102144-241023... 28 7.8 >12_02_0896 + 24100015-24100240,24100910-24101277,24102144-24102380, 24102461-24102754 Length = 374 Score = 27.9 bits (59), Expect = 7.8 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 1/80 (1%) Frame = -3 Query: 602 TRKFYIFLIIKNLNFKTISFTYKSNITHNTRSRDKIKCSVK-AKQTCQRQCHSRLTPFIV 426 T K + ++ KN ++ +T R R+ +K ++ +R H +T +V Sbjct: 263 TDKAAVDIVFKNPRAGIAKRLVRAALTEAARKREMRYTDIKHIERGSRRNFHDDITVVVV 322 Query: 425 YKMNKHKFVFKECLINHNSF 366 Y ++ HK + L N NSF Sbjct: 323 Y-LDHHKHGVRPNLGNRNSF 341 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,500,907 Number of Sequences: 37544 Number of extensions: 249039 Number of successful extensions: 448 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 442 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 448 length of database: 14,793,348 effective HSP length: 79 effective length of database: 11,827,372 effective search space used: 1703141568 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -