Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7683| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.21 
SB_47383| Best HMM Match : LON (HMM E-Value=1.3)                       29   2.6  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)        28   6.0  
SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   7.9  

>SB_7683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 84

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -3

Query: 488 SVKAKQTCQRQCHSRLTPFIVYKMNKHKFVFKECLINHNSFI 363
           +VK   TC  +  S+L  F V K+ K KF+ K   I H S++
Sbjct: 2   TVKTSDTCSSRRRSQLVSFSVLKLTKQKFLRKP-FIRHTSYV 42


>SB_47383| Best HMM Match : LON (HMM E-Value=1.3)
          Length = 1528

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -1

Query: 304 FSLNIIFLTITNLQLFFNFIIFREMLKNYNCRFKIY*MSNSSSIQKAISNEI 149
           ++ + IF  ITN+  F NF++ +  LK    +   Y +   + I+K++ + +
Sbjct: 333 YTESCIFQAITNIPFFKNFLVIKSFLKWKEIKNFTYFLKIEAQIEKSLIHNV 384


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 560  FKT-ISFTYKSNITHNTRSRDKIKCSVKAKQTCQRQCHSRLTPF 432
            FKT ++ +  + ++H  R  +KIK SV  K    +QC S+L  F
Sbjct: 953  FKTDMASSINATLSHINRRFEKIKSSVTHKHRSLKQCVSQLNAF 996


>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
          Length = 683

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 488 SVKAKQTCQRQCHSRLTPFIVYKMNKHKFVFKECLINHNSFISN 357
           S   ++T      S +T F+VYK  K +   K+CL N    +SN
Sbjct: 494 SFPCQKTLTSASPSDITRFLVYKDRKGRTKIKKCLDNKVFLVSN 537


>SB_14763| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 689

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
 Frame = -3

Query: 551 ISFTYKSNITHN----TRSRD---KIKCSVKAKQTCQRQCHSRLTPFIVYKMNKHKFVFK 393
           +S  YK    HN    TR+R+      CS   +QT     +S +  F+  + +   F FK
Sbjct: 136 VSTCYKEEDDHNSSGITRARNFHFPFTCSYGRRQTVSSSSYSHVGSFMASEGSYGNFTFK 195

Query: 392 ECLINHNSFIS 360
             L  + S+ S
Sbjct: 196 MALYRNQSYSS 206


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,253,071
Number of Sequences: 59808
Number of extensions: 335478
Number of successful extensions: 652
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1721264831
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)