Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.        24   5.0  
AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    23   8.8  
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    23   8.8  

>AY578795-1|AAT07300.1|  441|Anopheles gambiae Gbb-60A2 protein.
          Length = 441

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 133 SNCNFCILVFFFQTENSFFLPHHVYII*SNKF 38
           +N    + V++ ++     LPH V +I SN+F
Sbjct: 238 ANKGIFVEVYYAESPRKEILPHEVGLILSNRF 269


>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -3

Query: 632 IIDDSNKTKDTRKFYIFLIIKNLNF 558
           +++++ K KDTR + I L+   +NF
Sbjct: 313 LLEEAEKKKDTRNWKIILLRILVNF 337


>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1154

 Score = 23.0 bits (47), Expect = 8.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 614 KTKDTRKFYIFLIIKNLNFKTISFTYKSNITHNTRSRDKI 495
           KTK  R+    L +K++NF   + T    +   TR+ D++
Sbjct: 248 KTKQFRENSFLLALKDVNFAEQAVTDADIVEMMTRACDEV 287


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 655,412
Number of Sequences: 2352
Number of extensions: 12122
Number of successful extensions: 65
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)