Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2607|AAF53466.1|  385|Drosophila melanogaster CG15256-P...    29   5.8  

>AE014134-2607|AAF53466.1|  385|Drosophila melanogaster CG15256-PA
           protein.
          Length = 385

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
 Frame = -3

Query: 626 DDSNKTKDTRKFYIFL--IIK-NLNFKTISFTYKS---NITHNTRSRDKIKCSVKAKQTC 465
           D S+   D  +FY  L  IIK +LN K +   Y++   NI H+T  R K   +V+     
Sbjct: 317 DRSSNATDQLRFYQTLHSIIKQSLNVKVLKNIYQTKFNNIRHDTLLRYKDTIAVRVANPL 376

Query: 464 QRQCHSRLT 438
            R  H+R++
Sbjct: 377 FRLSHNRIS 385


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,146,794
Number of Sequences: 53049
Number of extensions: 492655
Number of successful extensions: 829
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2910007350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)