Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical ...    28   6.9  

>Z68317-4|CAA92688.1|  486|Caenorhabditis elegans Hypothetical
           protein T01H3.4 protein.
          Length = 486

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = -3

Query: 632 IIDDSNKTKDTRKFYIFLIIKNLNFKTISFTYKSNITHNTRSRDKIKCS 486
           II+DS  +K+ R F IFLI      KT+  TY   +    R R  ++ S
Sbjct: 333 IINDSKFSKNDRVFEIFLINDETPKKTVYSTYGQLLYTGKRLRSAVQLS 381


>AL021386-3|CAA16167.1|  330|Caenorhabditis elegans Hypothetical
           protein F57E7.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 382 LITTHLFPIKKFSSSP---KHNRRVCQIKFSLNIIFLTITNLQLFFNFIIFREML 227
           L++   FP+  F +     K    + ++KFS+  + LT T L +FFN++    M+
Sbjct: 21  LLSCIQFPVNAFGTYIILFKTPNNLGKVKFSILTMHLTCTWLDIFFNYLAIPYMI 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,539,567
Number of Sequences: 27780
Number of extensions: 296180
Number of successful extensions: 750
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 746
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)