Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1617
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44940.1 68418.m05512 F-box family protein contains F-box dom...    28   6.5  
At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to...    27   8.6  
At4g22540.1 68417.m03253 oxysterol-binding family protein simila...    27   8.6  

>At5g44940.1 68418.m05512 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 377

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 554 TISFTYKSNITHNTRSRDKIKCSVKAKQTCQ 462
           T+SFTY S    +  S  K+  S K   TCQ
Sbjct: 343 TLSFTYHSKKKQDPESYKKLLTSTKLSPTCQ 373


>At4g30420.1 68417.m04321 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 373

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 593 IFLYPLFYLSRLLSKVAI 646
           IF++P  YLSR  SK+AI
Sbjct: 40  IFIFPFLYLSRRKSKIAI 57


>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
           to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
           cuniculus}; contains Pfam profiles PF00169: PH domain,
           PF01237: Oxysterol-binding protein
          Length = 721

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 605 DTRKFYIFLIIKNLNFKTISFT 540
           D RKFYIF   K L+ +T S T
Sbjct: 142 DDRKFYIFTATKTLHLRTDSIT 163


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,906,090
Number of Sequences: 28952
Number of extensions: 240106
Number of successful extensions: 469
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)