Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1616
(832 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 30 0.46
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.46
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 27 2.5
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 27 2.5
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 27 3.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 3.3
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 4.3
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 4.3
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 5.7
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 5.7
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 5.7
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 7.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 10.0
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 25 10.0
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 29.9 bits (64), Expect = 0.46
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 360 SLSKCPLSRLGSIMCWLT*VFLHSGPSCISLDSAICPM 473
SLS+CP ++ C L + +S PS +D + CP+
Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPL 649
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.9 bits (64), Expect = 0.46
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 654 PGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRINRRVRAFQNQKF 806
PG P P P P Y + ++T +GN++ R+ RA Q KF
Sbjct: 16 PGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRASQKSKF 66
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 661 PPGLPIAPSIRMPERTPHQRPCGTVGKRRKRRP 563
PP P P P + P P G V KR+ + P
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41
>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
Php5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 415
Score = 27.5 bits (58), Expect = 2.5
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Frame = +3
Query: 663 FPTYPGAPD---PQPTYTEPPFSQTAGNTGNMDYTA 761
FPT G P+ P PT ++ PFS + +M Y++
Sbjct: 219 FPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSS 254
>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 256 LPSESVRQPLDDMQPITITLNSQHTAL 176
LP E + +P+D ++P T TLN T L
Sbjct: 332 LPDEDIYKPVDKVEPGTRTLNISGTEL 358
>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
Hus5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 119 KSWRRV*PSGFYSKASCDRQGGM 187
K WRR P GFY+K GG+
Sbjct: 14 KQWRRDHPFGFYAKPCKSSDGGL 36
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 618 RSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTA 761
R IR G GG PTY G P + FS++A + Y++
Sbjct: 54 RQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSS 101
>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 478
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 89 NGYFRCVWGWKSWRRV*PSGFYSKA 163
NG F+CV G ++WRR P F S A
Sbjct: 182 NGRFQCVCGRQNWRR--PVNFASHA 204
>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +2
Query: 350 GEYLFEQMSSVKTRKHYVLADLGFSAFWAFLYFVG 454
G Y + ++ R Y L +GF FW YF G
Sbjct: 111 GFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYFQG 145
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 467 TNSRIQRNTRRPRMQKNLSQPTHNAS 390
+ SR N RR KN + PTH+AS
Sbjct: 77 SRSRSSNNKRRTSFGKNGASPTHSAS 102
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +2
Query: 542 SSPYL-LGWPALSSLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRG 682
S+PY +PA+S L++ S + + S +G + WR +G
Sbjct: 354 STPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRSDEQSKG 401
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 5.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +2
Query: 251 WEDHCVYNDDTNACNYGVGI--SVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFS 424
WE++C CN VGI S+I F A+ A + E LF + +V H L D+ +
Sbjct: 97 WEEYCT---QMTKCNEKVGIDSSLITFPAAKA--LRESLFLKSGAVLVGDHDNLVDIVWG 151
Query: 425 A 427
A
Sbjct: 152 A 152
>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1097
Score = 26.2 bits (55), Expect = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 219 ISSKGWRTDSDGRTIACTMM 278
I+S WRT S G T C M+
Sbjct: 852 INSSSWRTTSSGETSFCRML 871
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = -2
Query: 339 ATEAMNA-MTDIPTP*LHAFVSSLYT 265
A+E +N MTD+ T +H F +SLYT
Sbjct: 859 ASEPINVDMTDVGTQFVHIFHASLYT 884
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.4 bits (53), Expect = 10.0
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 681 APDPQPTYTEPPFSQT 728
AP+PQP+Y E F+ T
Sbjct: 865 APEPQPSYEEESFNAT 880
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 25.4 bits (53), Expect = 10.0
Identities = 8/34 (23%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +2
Query: 260 HCVYNDDTNACNY-GVGISVIAFIASVAFIVGEY 358
+C+ ++ ++A N G+ +S++ + ++AF++ Y
Sbjct: 180 YCIVHNKSSAANIVGIVLSIVVTLGTLAFLIVRY 213
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,321
Number of Sequences: 5004
Number of extensions: 75880
Number of successful extensions: 258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -