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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1616
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    30   0.46 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.46 
SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi...    27   2.5  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    27   2.5  
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    27   3.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.3  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    27   3.3  
SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos...    27   4.3  
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz...    27   4.3  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.7  
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    26   5.7  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           26   5.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   7.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   10.0 
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    25   10.0 

>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 360 SLSKCPLSRLGSIMCWLT*VFLHSGPSCISLDSAICPM 473
           SLS+CP     ++ C L   + +S PS   +D + CP+
Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPL 649


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.46
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +3

Query: 654 PGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRINRRVRAFQNQKF 806
           PG  P     P P P Y +   ++T   +GN++       R+ RA Q  KF
Sbjct: 16  PGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRASQKSKF 66



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 661 PPGLPIAPSIRMPERTPHQRPCGTVGKRRKRRP 563
           PP  P  P    P + P   P G V KR+ + P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41


>SPBC3B8.02 |php5||CCAAT-binding factor complex subunit
           Php5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = +3

Query: 663 FPTYPGAPD---PQPTYTEPPFSQTAGNTGNMDYTA 761
           FPT  G P+   P PT ++ PFS    +  +M Y++
Sbjct: 219 FPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSS 254


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 256 LPSESVRQPLDDMQPITITLNSQHTAL 176
           LP E + +P+D ++P T TLN   T L
Sbjct: 332 LPDEDIYKPVDKVEPGTRTLNISGTEL 358


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 119 KSWRRV*PSGFYSKASCDRQGGM 187
           K WRR  P GFY+K      GG+
Sbjct: 14  KQWRRDHPFGFYAKPCKSSDGGL 36


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 618 RSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTA 761
           R  IR  G     GG PTY G   P  +     FS++A  +    Y++
Sbjct: 54  RQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSS 101


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +2

Query: 89  NGYFRCVWGWKSWRRV*PSGFYSKA 163
           NG F+CV G ++WRR  P  F S A
Sbjct: 182 NGRFQCVCGRQNWRR--PVNFASHA 204


>SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit
           Ssr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +2

Query: 350 GEYLFEQMSSVKTRKHYVLADLGFSAFWAFLYFVG 454
           G Y   +  ++  R  Y L  +GF  FW   YF G
Sbjct: 111 GFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYFQG 145


>SPAC22E12.11c |set3||histone lysine methyltransferase
           Set3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 859

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 467 TNSRIQRNTRRPRMQKNLSQPTHNAS 390
           + SR   N RR    KN + PTH+AS
Sbjct: 77  SRSRSSNNKRRTSFGKNGASPTHSAS 102


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 542 SSPYL-LGWPALSSLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRG 682
           S+PY    +PA+S L++ S +  +  S    +G  +   WR     +G
Sbjct: 354 STPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRSDEQSKG 401


>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = +2

Query: 251 WEDHCVYNDDTNACNYGVGI--SVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFS 424
           WE++C        CN  VGI  S+I F A+ A  + E LF +  +V    H  L D+ + 
Sbjct: 97  WEEYCT---QMTKCNEKVGIDSSLITFPAAKA--LRESLFLKSGAVLVGDHDNLVDIVWG 151

Query: 425 A 427
           A
Sbjct: 152 A 152


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 219 ISSKGWRTDSDGRTIACTMM 278
           I+S  WRT S G T  C M+
Sbjct: 852 INSSSWRTTSSGETSFCRML 871


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -2

Query: 339 ATEAMNA-MTDIPTP*LHAFVSSLYT 265
           A+E +N  MTD+ T  +H F +SLYT
Sbjct: 859 ASEPINVDMTDVGTQFVHIFHASLYT 884


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 681 APDPQPTYTEPPFSQT 728
           AP+PQP+Y E  F+ T
Sbjct: 865 APEPQPSYEEESFNAT 880


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 8/34 (23%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +2

Query: 260 HCVYNDDTNACNY-GVGISVIAFIASVAFIVGEY 358
           +C+ ++ ++A N  G+ +S++  + ++AF++  Y
Sbjct: 180 YCIVHNKSSAANIVGIVLSIVVTLGTLAFLIVRY 213


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,507,321
Number of Sequences: 5004
Number of extensions: 75880
Number of successful extensions: 258
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 258
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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