BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1616 (832 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 30 0.46 SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 30 0.46 SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schi... 27 2.5 SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz... 27 2.5 SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch... 27 3.3 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 3.3 SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb... 27 3.3 SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizos... 27 4.3 SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 4.3 SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 26 5.7 SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 26 5.7 SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual 26 5.7 SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 7.5 SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 10.0 SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 25 10.0 >SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pombe|chr 2|||Manual Length = 1692 Score = 29.9 bits (64), Expect = 0.46 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +3 Query: 360 SLSKCPLSRLGSIMCWLT*VFLHSGPSCISLDSAICPM 473 SLS+CP ++ C L + +S PS +D + CP+ Sbjct: 612 SLSECPKLNSINVACNLLSFYEYSNPSATFIDFSFCPL 649 >SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 2363 Score = 29.9 bits (64), Expect = 0.46 Identities = 16/51 (31%), Positives = 23/51 (45%) Frame = +3 Query: 654 PGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRINRRVRAFQNQKF 806 PG P P P P Y + ++T +GN++ R+ RA Q KF Sbjct: 16 PGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARKWRASQKSKF 66 Score = 26.6 bits (56), Expect = 4.3 Identities = 12/33 (36%), Positives = 15/33 (45%) Frame = -1 Query: 661 PPGLPIAPSIRMPERTPHQRPCGTVGKRRKRRP 563 PP P P P + P P G V KR+ + P Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41 >SPBC3B8.02 |php5||CCAAT-binding factor complex subunit Php5|Schizosaccharomyces pombe|chr 2|||Manual Length = 415 Score = 27.5 bits (58), Expect = 2.5 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Frame = +3 Query: 663 FPTYPGAPD---PQPTYTEPPFSQTAGNTGNMDYTA 761 FPT G P+ P PT ++ PFS + +M Y++ Sbjct: 219 FPTQAGLPNQGFPMPTGSQLPFSNQQSSQPSMQYSS 254 >SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 490 Score = 27.5 bits (58), Expect = 2.5 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = -1 Query: 256 LPSESVRQPLDDMQPITITLNSQHTAL 176 LP E + +P+D ++P T TLN T L Sbjct: 332 LPDEDIYKPVDKVEPGTRTLNISGTEL 358 >SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosaccharomyces pombe|chr 1|||Manual Length = 157 Score = 27.1 bits (57), Expect = 3.3 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = +2 Query: 119 KSWRRV*PSGFYSKASCDRQGGM 187 K WRR P GFY+K GG+ Sbjct: 14 KQWRRDHPFGFYAKPCKSSDGGL 36 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 27.1 bits (57), Expect = 3.3 Identities = 15/48 (31%), Positives = 21/48 (43%) Frame = +3 Query: 618 RSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTA 761 R IR G GG PTY G P + FS++A + Y++ Sbjct: 54 RQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSS 101 >SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 478 Score = 27.1 bits (57), Expect = 3.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = +2 Query: 89 NGYFRCVWGWKSWRRV*PSGFYSKA 163 NG F+CV G ++WRR P F S A Sbjct: 182 NGRFQCVCGRQNWRR--PVNFASHA 204 >SPBP23A10.05 |ssr4||SWI/SNF and RSC complex subunit Ssr4|Schizosaccharomyces pombe|chr 2|||Manual Length = 395 Score = 26.6 bits (56), Expect = 4.3 Identities = 12/35 (34%), Positives = 16/35 (45%) Frame = +2 Query: 350 GEYLFEQMSSVKTRKHYVLADLGFSAFWAFLYFVG 454 G Y + ++ R Y L +GF FW YF G Sbjct: 111 GFYPLSETRTMHVRCRYRLLGVGFDNFWLVHYFQG 145 >SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schizosaccharomyces pombe|chr 1|||Manual Length = 859 Score = 26.6 bits (56), Expect = 4.3 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = -3 Query: 467 TNSRIQRNTRRPRMQKNLSQPTHNAS 390 + SR N RR KN + PTH+AS Sbjct: 77 SRSRSSNNKRRTSFGKNGASPTHSAS 102 >SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizosaccharomyces pombe|chr 2|||Manual Length = 468 Score = 26.2 bits (55), Expect = 5.7 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%) Frame = +2 Query: 542 SSPYL-LGWPALSSLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRG 682 S+PY +PA+S L++ S + + S +G + WR +G Sbjct: 354 STPYCHTSYPAMSRLNSSSGYTCVSSSSVTNSGHTENNTWRSDEQSKG 401 >SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces pombe|chr 1|||Manual Length = 598 Score = 26.2 bits (55), Expect = 5.7 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%) Frame = +2 Query: 251 WEDHCVYNDDTNACNYGVGI--SVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFS 424 WE++C CN VGI S+I F A+ A + E LF + +V H L D+ + Sbjct: 97 WEEYCT---QMTKCNEKVGIDSSLITFPAAKA--LRESLFLKSGAVLVGDHDNLVDIVWG 151 Query: 425 A 427 A Sbjct: 152 A 152 >SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual Length = 1097 Score = 26.2 bits (55), Expect = 5.7 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +3 Query: 219 ISSKGWRTDSDGRTIACTMM 278 I+S WRT S G T C M+ Sbjct: 852 INSSSWRTTSSGETSFCRML 871 >SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1610 Score = 25.8 bits (54), Expect = 7.5 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -2 Query: 339 ATEAMNA-MTDIPTP*LHAFVSSLYT 265 A+E +N MTD+ T +H F +SLYT Sbjct: 859 ASEPINVDMTDVGTQFVHIFHASLYT 884 >SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 1611 Score = 25.4 bits (53), Expect = 10.0 Identities = 9/16 (56%), Positives = 12/16 (75%) Frame = +3 Query: 681 APDPQPTYTEPPFSQT 728 AP+PQP+Y E F+ T Sbjct: 865 APEPQPSYEEESFNAT 880 >SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 270 Score = 25.4 bits (53), Expect = 10.0 Identities = 8/34 (23%), Positives = 23/34 (67%), Gaps = 1/34 (2%) Frame = +2 Query: 260 HCVYNDDTNACNY-GVGISVIAFIASVAFIVGEY 358 +C+ ++ ++A N G+ +S++ + ++AF++ Y Sbjct: 180 YCIVHNKSSAANIVGIVLSIVVTLGTLAFLIVRY 213 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,507,321 Number of Sequences: 5004 Number of extensions: 75880 Number of successful extensions: 258 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 242 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 258 length of database: 2,362,478 effective HSP length: 72 effective length of database: 2,002,190 effective search space used: 408446760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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