BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1616 (832 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 09_06_0083 + 20753191-20754480 31 1.1 07_03_1507 - 27228032-27228742 31 1.5 07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323... 31 1.5 10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127... 30 2.0 01_06_0176 - 27233553-27234588,27235629-27235768 30 2.6 06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 29 3.4 02_01_0302 - 2021221-2023305 29 3.4 09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 4.5 01_06_1226 - 35518981-35519295,35519876-35520745 29 6.0 01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 6.0 01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 29 6.0 12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 7.9 10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 28 7.9 07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134... 28 7.9 02_05_1066 + 33852402-33852815,33852936-33853019,33853203-338534... 28 7.9 01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 7.9 >09_06_0083 + 20753191-20754480 Length = 429 Score = 31.1 bits (67), Expect = 1.1 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%) Frame = +3 Query: 585 PTVPHGR*-CGVRSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPP 716 P +PHG+ G GI + A + GG P G+P P PP Sbjct: 305 PPLPHGKTPSGAPGGIALPPAAPAGGGMPQQHGSPHHLPLGASPP 349 >07_03_1507 - 27228032-27228742 Length = 236 Score = 30.7 bits (66), Expect = 1.5 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +3 Query: 594 PHGR*CGVRSGIRMEGAIGSPGGFPTYPGAPDPQP 698 P GR C G E A G+P P+ PG P P Sbjct: 155 PSGRGCAAPVGRAGEAAFGAPSRLPSGPGRQPPAP 189 >07_03_0763 - 21331534-21331779,21331871-21332021,21332093-21332330, 21332449-21332659,21332744-21332871,21333569-21333706, 21333825-21334644 Length = 643 Score = 30.7 bits (66), Expect = 1.5 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%) Frame = -3 Query: 629 YAGANAASAPMRNRWKAKKAQATQANMEKKQNAIA----PCMLFAFRSVASQFCPKHWTN 462 ++G + P + A A + K++AI P + ++A+ FC W Sbjct: 250 FSGRSLLQLPGPSPSPAPPVTAAGERSKNKRSAILAISMPTIALVLATIAAWFCSTSWRR 309 Query: 461 SRIQRNTRRPRMQKNLSQ 408 R+ R T RP+ ++ Q Sbjct: 310 RRLARKTLRPKSSEDEMQ 327 >10_08_0102 + 14810293-14811345,14811989-14812108,14812745-14812792, 14812886-14813006,14814073-14814129,14815109-14815217, 14815298-14815523,14815608-14815724,14816041-14816119, 14816303-14816325,14816698-14816742,14816872-14817030 Length = 718 Score = 30.3 bits (65), Expect = 2.0 Identities = 16/38 (42%), Positives = 21/38 (55%) Frame = +2 Query: 578 SLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRP 691 SL + + WAL R GGR WR+S+ P G+RP Sbjct: 31 SLGSPTGWALSSRDF--VVGGRQ---WRISYYPNGNRP 63 >01_06_0176 - 27233553-27234588,27235629-27235768 Length = 391 Score = 29.9 bits (64), Expect = 2.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -3 Query: 701 GRLRVWSPWVGGKASRASDRALHSYAGANAASAPMRNRW 585 GR+R W P+ GG +S +S +A + G + A RW Sbjct: 242 GRVRSWIPYYGGSSS-SSSQAADAGGGGESEEAKAMCRW 279 >06_03_1450 + 30246702-30247346,30248603-30248689,30248789-30248920, 30249016-30249162,30250375-30250440,30250519-30250629, 30251551-30251584,30251667-30251743,30251829-30251906 Length = 458 Score = 29.5 bits (63), Expect = 3.4 Identities = 10/22 (45%), Positives = 12/22 (54%) Frame = +3 Query: 651 SPGGFPTYPGAPDPQPTYTEPP 716 +P +PTYP P P Y PP Sbjct: 43 APAAYPTYPPPPADPPQYAPPP 64 >02_01_0302 - 2021221-2023305 Length = 694 Score = 29.5 bits (63), Expect = 3.4 Identities = 11/21 (52%), Positives = 12/21 (57%) Frame = +3 Query: 654 PGGFPTYPGAPDPQPTYTEPP 716 P PT+P P P TYT PP Sbjct: 534 PQSTPTHPSYPSPPVTYTPPP 554 >09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 Length = 1908 Score = 29.1 bits (62), Expect = 4.5 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%) Frame = +3 Query: 624 GIR-MEGAIGSPGGFPTYPGAPDPQ 695 G+R + +G FPT PGAPDPQ Sbjct: 1113 GLRPLTTGVGPLPAFPTTPGAPDPQ 1137 >01_06_1226 - 35518981-35519295,35519876-35520745 Length = 394 Score = 28.7 bits (61), Expect = 6.0 Identities = 15/50 (30%), Positives = 20/50 (40%) Frame = +3 Query: 633 MEGAIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRINRRV 782 M GA G GG +PG P P P+ + G D I +R+ Sbjct: 13 MSGANGGGGGGSVFPGPPPPTPSNHHHALPSSGAAGGGTDAALSTILQRL 62 >01_05_0292 + 20518668-20519090,20519213-20519281,20520204-20520473, 20520734-20521084,20521251-20521528,20522755-20523099, 20523346-20523911,20525155-20525528 Length = 891 Score = 28.7 bits (61), Expect = 6.0 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Frame = +2 Query: 542 SSPYLLGWPALSSLSNG-SAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRPAAYLHRTSL 718 SSP+ G A ++ ++G S WA R SL GGR R R G A SL Sbjct: 824 SSPHRRGLAAFAAATSGRSRWAGQRCSLWRAGGGRRRARQRCGGAREGDSGARVGDGGSL 883 Query: 719 L 721 L Sbjct: 884 L 884 >01_05_0078 + 17931998-17932062,17933320-17933416,17933506-17933601, 17933957-17933988,17935143-17935595,17935831-17935975, 17936058-17936159,17937798-17937890,17939448-17939489, 17940092-17940202,17940446-17940517,17940596-17940714, 17940981-17941044,17941133-17942782 Length = 1046 Score = 28.7 bits (61), Expect = 6.0 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Frame = -2 Query: 681 PLGRWESLQGFRSRPPFVCRSERRISAHAEPLESEESA----GHPSKYGEEAECNSALHV 514 P G SLQ R F R++R + LES GHP++Y + ++ L Sbjct: 863 PTGNVYSLQSLRDSDRFY-RTQRSEDRNTNSLESTTGDAPLHGHPTRYSRQVGDDNYLQT 921 Query: 513 VRVP 502 RVP Sbjct: 922 SRVP 925 >12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735, 3338974-3339022,3339225-3339533,3339555-3339710, 3339871-3340086,3340404-3340906,3341050-3341116, 3341215-3341272,3341561-3341699,3341840-3341956, 3342069-3342246,3342459-3343093 Length = 996 Score = 28.3 bits (60), Expect = 7.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 467 SNAWGKTEKPPIGTRTTCRALLHSASSPYLLG 562 S+ + T P T+T C ++SASSP L G Sbjct: 499 SSPFAPTISNPFPTQTNCSQFVNSASSPSLFG 530 >10_08_0141 + 15159160-15159306,15159708-15159815,15159958-15160006, 15160067-15160182,15160358-15160399,15161026-15161442, 15162356-15162509,15162911-15162975,15163793-15163870, 15163951-15164061,15164227-15164271,15164677-15164850, 15165383-15166335,15166471-15166681,15167037-15167196, 15168786-15169174 Length = 1072 Score = 28.3 bits (60), Expect = 7.9 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = +2 Query: 476 WGKTEKPPIGTRTTCRALLHSASS 547 WG+ E G RT+CRA L SS Sbjct: 61 WGRVEAQNSGARTSCRAALQWLSS 84 >07_03_0749 + 21212463-21212911,21212976-21213305,21213336-21213436, 21213758-21213883,21213962-21214083,21214177-21214450, 21214767-21215004,21215101-21215248,21215400-21215732 Length = 706 Score = 28.3 bits (60), Expect = 7.9 Identities = 10/26 (38%), Positives = 16/26 (61%) Frame = -3 Query: 689 VWSPWVGGKASRASDRALHSYAGANA 612 VW+ W G S+ D++LH Y+ + A Sbjct: 597 VWNCWTKGTVSQMIDQSLHGYSQSQA 622 >02_05_1066 + 33852402-33852815,33852936-33853019,33853203-33853454, 33853643-33853708,33854784-33854849,33854935-33855003, 33855829-33856165,33856438-33856541 Length = 463 Score = 28.3 bits (60), Expect = 7.9 Identities = 14/37 (37%), Positives = 19/37 (51%) Frame = -3 Query: 671 GGKASRASDRALHSYAGANAASAPMRNRWKAKKAQAT 561 GG AS A + A+AP R R +A++ QAT Sbjct: 184 GGGGGSASAAAAAGASSGGGAAAPPRQRQRARRGQAT 220 >01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748, 3324504-3324654,3324740-3324818,3325826-3325934 Length = 578 Score = 28.3 bits (60), Expect = 7.9 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +3 Query: 648 GSPGGFPTYPGAPDPQPTYT 707 G PG +P GAP P P Y+ Sbjct: 345 GGPGSYPPSYGAPPPNPPYS 364 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,498,401 Number of Sequences: 37544 Number of extensions: 583084 Number of successful extensions: 2065 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 1934 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2061 length of database: 14,793,348 effective HSP length: 81 effective length of database: 11,752,284 effective search space used: 2291695380 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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