SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1616
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0083 + 20753191-20754480                                         31   1.1  
07_03_1507 - 27228032-27228742                                         31   1.5  
07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323...    31   1.5  
10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127...    30   2.0  
01_06_0176 - 27233553-27234588,27235629-27235768                       30   2.6  
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489...    29   3.4  
02_01_0302 - 2021221-2023305                                           29   3.4  
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539     29   4.5  
01_06_1226 - 35518981-35519295,35519876-35520745                       29   6.0  
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204...    29   6.0  
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336...    29   6.0  
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333...    28   7.9  
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    28   7.9  
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134...    28   7.9  
02_05_1066 + 33852402-33852815,33852936-33853019,33853203-338534...    28   7.9  
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332...    28   7.9  

>09_06_0083 + 20753191-20754480
          Length = 429

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = +3

Query: 585 PTVPHGR*-CGVRSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPP 716
           P +PHG+   G   GI +  A  + GG P   G+P   P    PP
Sbjct: 305 PPLPHGKTPSGAPGGIALPPAAPAGGGMPQQHGSPHHLPLGASPP 349


>07_03_1507 - 27228032-27228742
          Length = 236

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = +3

Query: 594 PHGR*CGVRSGIRMEGAIGSPGGFPTYPGAPDPQP 698
           P GR C    G   E A G+P   P+ PG   P P
Sbjct: 155 PSGRGCAAPVGRAGEAAFGAPSRLPSGPGRQPPAP 189


>07_03_0763 -
           21331534-21331779,21331871-21332021,21332093-21332330,
           21332449-21332659,21332744-21332871,21333569-21333706,
           21333825-21334644
          Length = 643

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = -3

Query: 629 YAGANAASAPMRNRWKAKKAQATQANMEKKQNAIA----PCMLFAFRSVASQFCPKHWTN 462
           ++G +    P  +   A    A     + K++AI     P +     ++A+ FC   W  
Sbjct: 250 FSGRSLLQLPGPSPSPAPPVTAAGERSKNKRSAILAISMPTIALVLATIAAWFCSTSWRR 309

Query: 461 SRIQRNTRRPRMQKNLSQ 408
            R+ R T RP+  ++  Q
Sbjct: 310 RRLARKTLRPKSSEDEMQ 327


>10_08_0102 +
           14810293-14811345,14811989-14812108,14812745-14812792,
           14812886-14813006,14814073-14814129,14815109-14815217,
           14815298-14815523,14815608-14815724,14816041-14816119,
           14816303-14816325,14816698-14816742,14816872-14817030
          Length = 718

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 578 SLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRP 691
           SL + + WAL  R      GGR    WR+S+ P G+RP
Sbjct: 31  SLGSPTGWALSSRDF--VVGGRQ---WRISYYPNGNRP 63


>01_06_0176 - 27233553-27234588,27235629-27235768
          Length = 391

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 701 GRLRVWSPWVGGKASRASDRALHSYAGANAASAPMRNRW 585
           GR+R W P+ GG +S +S +A  +  G  +  A    RW
Sbjct: 242 GRVRSWIPYYGGSSS-SSSQAADAGGGGESEEAKAMCRW 279


>06_03_1450 +
           30246702-30247346,30248603-30248689,30248789-30248920,
           30249016-30249162,30250375-30250440,30250519-30250629,
           30251551-30251584,30251667-30251743,30251829-30251906
          Length = 458

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 651 SPGGFPTYPGAPDPQPTYTEPP 716
           +P  +PTYP  P   P Y  PP
Sbjct: 43  APAAYPTYPPPPADPPQYAPPP 64


>02_01_0302 - 2021221-2023305
          Length = 694

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +3

Query: 654 PGGFPTYPGAPDPQPTYTEPP 716
           P   PT+P  P P  TYT PP
Sbjct: 534 PQSTPTHPSYPSPPVTYTPPP 554


>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
          Length = 1908

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +3

Query: 624  GIR-MEGAIGSPGGFPTYPGAPDPQ 695
            G+R +   +G    FPT PGAPDPQ
Sbjct: 1113 GLRPLTTGVGPLPAFPTTPGAPDPQ 1137


>01_06_1226 - 35518981-35519295,35519876-35520745
          Length = 394

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 15/50 (30%), Positives = 20/50 (40%)
 Frame = +3

Query: 633 MEGAIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRINRRV 782
           M GA G  GG   +PG P P P+        +    G  D     I +R+
Sbjct: 13  MSGANGGGGGGSVFPGPPPPTPSNHHHALPSSGAAGGGTDAALSTILQRL 62


>01_05_0292 + 20518668-20519090,20519213-20519281,20520204-20520473,
            20520734-20521084,20521251-20521528,20522755-20523099,
            20523346-20523911,20525155-20525528
          Length = 891

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
 Frame = +2

Query: 542  SSPYLLGWPALSSLSNG-SAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRPAAYLHRTSL 718
            SSP+  G  A ++ ++G S WA  R SL    GGR R   R      G   A      SL
Sbjct: 824  SSPHRRGLAAFAAATSGRSRWAGQRCSLWRAGGGRRRARQRCGGAREGDSGARVGDGGSL 883

Query: 719  L 721
            L
Sbjct: 884  L 884


>01_05_0078 + 17931998-17932062,17933320-17933416,17933506-17933601,
            17933957-17933988,17935143-17935595,17935831-17935975,
            17936058-17936159,17937798-17937890,17939448-17939489,
            17940092-17940202,17940446-17940517,17940596-17940714,
            17940981-17941044,17941133-17942782
          Length = 1046

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
 Frame = -2

Query: 681  PLGRWESLQGFRSRPPFVCRSERRISAHAEPLESEESA----GHPSKYGEEAECNSALHV 514
            P G   SLQ  R    F  R++R    +   LES        GHP++Y  +   ++ L  
Sbjct: 863  PTGNVYSLQSLRDSDRFY-RTQRSEDRNTNSLESTTGDAPLHGHPTRYSRQVGDDNYLQT 921

Query: 513  VRVP 502
             RVP
Sbjct: 922  SRVP 925


>12_01_0423 +
           3337401-3337419,3337777-3338235,3338650-3338735,
           3338974-3339022,3339225-3339533,3339555-3339710,
           3339871-3340086,3340404-3340906,3341050-3341116,
           3341215-3341272,3341561-3341699,3341840-3341956,
           3342069-3342246,3342459-3343093
          Length = 996

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 467 SNAWGKTEKPPIGTRTTCRALLHSASSPYLLG 562
           S+ +  T   P  T+T C   ++SASSP L G
Sbjct: 499 SSPFAPTISNPFPTQTNCSQFVNSASSPSLFG 530


>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 476 WGKTEKPPIGTRTTCRALLHSASS 547
           WG+ E    G RT+CRA L   SS
Sbjct: 61  WGRVEAQNSGARTSCRAALQWLSS 84


>07_03_0749 +
           21212463-21212911,21212976-21213305,21213336-21213436,
           21213758-21213883,21213962-21214083,21214177-21214450,
           21214767-21215004,21215101-21215248,21215400-21215732
          Length = 706

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 689 VWSPWVGGKASRASDRALHSYAGANA 612
           VW+ W  G  S+  D++LH Y+ + A
Sbjct: 597 VWNCWTKGTVSQMIDQSLHGYSQSQA 622


>02_05_1066 +
           33852402-33852815,33852936-33853019,33853203-33853454,
           33853643-33853708,33854784-33854849,33854935-33855003,
           33855829-33856165,33856438-33856541
          Length = 463

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 671 GGKASRASDRALHSYAGANAASAPMRNRWKAKKAQAT 561
           GG    AS  A    +    A+AP R R +A++ QAT
Sbjct: 184 GGGGGSASAAAAAGASSGGGAAAPPRQRQRARRGQAT 220


>01_01_0446 +
           3321832-3322232,3322398-3322455,3322810-3323748,
           3324504-3324654,3324740-3324818,3325826-3325934
          Length = 578

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 648 GSPGGFPTYPGAPDPQPTYT 707
           G PG +P   GAP P P Y+
Sbjct: 345 GGPGSYPPSYGAPPPNPPYS 364


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,498,401
Number of Sequences: 37544
Number of extensions: 583084
Number of successful extensions: 2065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -