Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1616
(832 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0083 + 20753191-20754480 31 1.1
07_03_1507 - 27228032-27228742 31 1.5
07_03_0763 - 21331534-21331779,21331871-21332021,21332093-213323... 31 1.5
10_08_0102 + 14810293-14811345,14811989-14812108,14812745-148127... 30 2.0
01_06_0176 - 27233553-27234588,27235629-27235768 30 2.6
06_03_1450 + 30246702-30247346,30248603-30248689,30248789-302489... 29 3.4
02_01_0302 - 2021221-2023305 29 3.4
09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539 29 4.5
01_06_1226 - 35518981-35519295,35519876-35520745 29 6.0
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 6.0
01_05_0078 + 17931998-17932062,17933320-17933416,17933506-179336... 29 6.0
12_01_0423 + 3337401-3337419,3337777-3338235,3338650-3338735,333... 28 7.9
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 28 7.9
07_03_0749 + 21212463-21212911,21212976-21213305,21213336-212134... 28 7.9
02_05_1066 + 33852402-33852815,33852936-33853019,33853203-338534... 28 7.9
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 7.9
>09_06_0083 + 20753191-20754480
Length = 429
Score = 31.1 bits (67), Expect = 1.1
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +3
Query: 585 PTVPHGR*-CGVRSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPP 716
P +PHG+ G GI + A + GG P G+P P PP
Sbjct: 305 PPLPHGKTPSGAPGGIALPPAAPAGGGMPQQHGSPHHLPLGASPP 349
>07_03_1507 - 27228032-27228742
Length = 236
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +3
Query: 594 PHGR*CGVRSGIRMEGAIGSPGGFPTYPGAPDPQP 698
P GR C G E A G+P P+ PG P P
Sbjct: 155 PSGRGCAAPVGRAGEAAFGAPSRLPSGPGRQPPAP 189
>07_03_0763 -
21331534-21331779,21331871-21332021,21332093-21332330,
21332449-21332659,21332744-21332871,21333569-21333706,
21333825-21334644
Length = 643
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Frame = -3
Query: 629 YAGANAASAPMRNRWKAKKAQATQANMEKKQNAIA----PCMLFAFRSVASQFCPKHWTN 462
++G + P + A A + K++AI P + ++A+ FC W
Sbjct: 250 FSGRSLLQLPGPSPSPAPPVTAAGERSKNKRSAILAISMPTIALVLATIAAWFCSTSWRR 309
Query: 461 SRIQRNTRRPRMQKNLSQ 408
R+ R T RP+ ++ Q
Sbjct: 310 RRLARKTLRPKSSEDEMQ 327
>10_08_0102 +
14810293-14811345,14811989-14812108,14812745-14812792,
14812886-14813006,14814073-14814129,14815109-14815217,
14815298-14815523,14815608-14815724,14816041-14816119,
14816303-14816325,14816698-14816742,14816872-14817030
Length = 718
Score = 30.3 bits (65), Expect = 2.0
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 578 SLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRP 691
SL + + WAL R GGR WR+S+ P G+RP
Sbjct: 31 SLGSPTGWALSSRDF--VVGGRQ---WRISYYPNGNRP 63
>01_06_0176 - 27233553-27234588,27235629-27235768
Length = 391
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -3
Query: 701 GRLRVWSPWVGGKASRASDRALHSYAGANAASAPMRNRW 585
GR+R W P+ GG +S +S +A + G + A RW
Sbjct: 242 GRVRSWIPYYGGSSS-SSSQAADAGGGGESEEAKAMCRW 279
>06_03_1450 +
30246702-30247346,30248603-30248689,30248789-30248920,
30249016-30249162,30250375-30250440,30250519-30250629,
30251551-30251584,30251667-30251743,30251829-30251906
Length = 458
Score = 29.5 bits (63), Expect = 3.4
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 651 SPGGFPTYPGAPDPQPTYTEPP 716
+P +PTYP P P Y PP
Sbjct: 43 APAAYPTYPPPPADPPQYAPPP 64
>02_01_0302 - 2021221-2023305
Length = 694
Score = 29.5 bits (63), Expect = 3.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 654 PGGFPTYPGAPDPQPTYTEPP 716
P PT+P P P TYT PP
Sbjct: 534 PQSTPTHPSYPSPPVTYTPPP 554
>09_06_0375 - 22653366-22657112,22657185-22658457,22658833-22659539
Length = 1908
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 624 GIR-MEGAIGSPGGFPTYPGAPDPQ 695
G+R + +G FPT PGAPDPQ
Sbjct: 1113 GLRPLTTGVGPLPAFPTTPGAPDPQ 1137
>01_06_1226 - 35518981-35519295,35519876-35520745
Length = 394
Score = 28.7 bits (61), Expect = 6.0
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 633 MEGAIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRINRRV 782
M GA G GG +PG P P P+ + G D I +R+
Sbjct: 13 MSGANGGGGGGSVFPGPPPPTPSNHHHALPSSGAAGGGTDAALSTILQRL 62
>01_05_0292 + 20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.7 bits (61), Expect = 6.0
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +2
Query: 542 SSPYLLGWPALSSLSNG-SAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRPAAYLHRTSL 718
SSP+ G A ++ ++G S WA R SL GGR R R G A SL
Sbjct: 824 SSPHRRGLAAFAAATSGRSRWAGQRCSLWRAGGGRRRARQRCGGAREGDSGARVGDGGSL 883
Query: 719 L 721
L
Sbjct: 884 L 884
>01_05_0078 + 17931998-17932062,17933320-17933416,17933506-17933601,
17933957-17933988,17935143-17935595,17935831-17935975,
17936058-17936159,17937798-17937890,17939448-17939489,
17940092-17940202,17940446-17940517,17940596-17940714,
17940981-17941044,17941133-17942782
Length = 1046
Score = 28.7 bits (61), Expect = 6.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Frame = -2
Query: 681 PLGRWESLQGFRSRPPFVCRSERRISAHAEPLESEESA----GHPSKYGEEAECNSALHV 514
P G SLQ R F R++R + LES GHP++Y + ++ L
Sbjct: 863 PTGNVYSLQSLRDSDRFY-RTQRSEDRNTNSLESTTGDAPLHGHPTRYSRQVGDDNYLQT 921
Query: 513 VRVP 502
RVP
Sbjct: 922 SRVP 925
>12_01_0423 +
3337401-3337419,3337777-3338235,3338650-3338735,
3338974-3339022,3339225-3339533,3339555-3339710,
3339871-3340086,3340404-3340906,3341050-3341116,
3341215-3341272,3341561-3341699,3341840-3341956,
3342069-3342246,3342459-3343093
Length = 996
Score = 28.3 bits (60), Expect = 7.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 467 SNAWGKTEKPPIGTRTTCRALLHSASSPYLLG 562
S+ + T P T+T C ++SASSP L G
Sbjct: 499 SSPFAPTISNPFPTQTNCSQFVNSASSPSLFG 530
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 476 WGKTEKPPIGTRTTCRALLHSASS 547
WG+ E G RT+CRA L SS
Sbjct: 61 WGRVEAQNSGARTSCRAALQWLSS 84
>07_03_0749 +
21212463-21212911,21212976-21213305,21213336-21213436,
21213758-21213883,21213962-21214083,21214177-21214450,
21214767-21215004,21215101-21215248,21215400-21215732
Length = 706
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 689 VWSPWVGGKASRASDRALHSYAGANA 612
VW+ W G S+ D++LH Y+ + A
Sbjct: 597 VWNCWTKGTVSQMIDQSLHGYSQSQA 622
>02_05_1066 +
33852402-33852815,33852936-33853019,33853203-33853454,
33853643-33853708,33854784-33854849,33854935-33855003,
33855829-33856165,33856438-33856541
Length = 463
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 671 GGKASRASDRALHSYAGANAASAPMRNRWKAKKAQAT 561
GG AS A + A+AP R R +A++ QAT
Sbjct: 184 GGGGGSASAAAAAGASSGGGAAAPPRQRQRARRGQAT 220
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 648 GSPGGFPTYPGAPDPQPTYT 707
G PG +P GAP P P Y+
Sbjct: 345 GGPGSYPPSYGAPPPNPPYS 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,498,401
Number of Sequences: 37544
Number of extensions: 583084
Number of successful extensions: 2065
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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