Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1616
         (832 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8561| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.66 
SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)                     31   1.1  
SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)                    30   2.6  
SB_9891| Best HMM Match : KE2 (HMM E-Value=1)                          30   2.6  
SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_8561| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +2

Query: 476 WGKTEKPPIGTRTTCRALLHSASSPYLLGWPALSSLSNGS---AWALMRRSLRHT 631
           WG TEK   GT     ALL      ++ GW +   L  G        M R LRHT
Sbjct: 139 WGSTEKLRSGTTYHGEALLSPGKYGFVAGWGSTEKLDPGQLPRGHRKMSRVLRHT 193


>SB_52450| Best HMM Match : DUF1222 (HMM E-Value=0)
          Length = 640

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = +2

Query: 563 WPALSSLSN-GSAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRP 691
           W    S+ N G  W + R    HT GG    P     +PRG RP
Sbjct: 149 WLVYHSIVNVGQRWPIPRGVQAHTQGGAGPYPGGCRPIPRGCRP 192


>SB_15878| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1929

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = -1

Query: 664  KPPGLPIAPSIRMPERTPHQRPCGTVGKRRKRRPPKQIWRRSRM 533
            KPP  P  PS++ P   P   P  T+G +R ++P K + ++ ++
Sbjct: 1165 KPPQPPPVPSVQAPPAPPPAPP--TMGLKRNQQPEKPVKQQEKL 1206


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/42 (45%), Positives = 21/42 (50%)
 Frame = +2

Query: 578  SLSNGSAWALMRRSLRHTNGGRDRKPWRLSHLPRGSRPAAYL 703
            SLS GSA +  R S  H N GR + P   S LPR   P   L
Sbjct: 3118 SLSIGSASSSARSSPVHFNLGRAQSPSSSSLLPRSHEPVPIL 3159


>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
          Length = 610

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 1/69 (1%)
 Frame = +3

Query: 573 FLRFPTVPHGR*CGVRSGIRMEGAIGSPGGFPTYP-GAPDPQPTYTEPPFSQTAGNTGNM 749
           FLR   +P  +    R  I +      P  +P +P G P P P  T            N 
Sbjct: 134 FLRLKNIPMSQCKEKRDLIELILQYSQPRRYPDFPRGTPHPPPPVTHDQRQGGTHPNSNS 193

Query: 750 DYTALRINR 776
             TA R+NR
Sbjct: 194 GQTANRVNR 202


>SB_9891| Best HMM Match : KE2 (HMM E-Value=1)
          Length = 572

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +3

Query: 642 AIGSPGGFPTYPGAPDPQPTYTEPPFSQTAGNTGNMDY 755
           A+GS G  P +PG     PT   PP  Q+  NTG + Y
Sbjct: 334 AVGSIGIIPGHPGGDLAAPTPILPP--QSVHNTGGLGY 369


>SB_48709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 931

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = +3

Query: 585 PTVPHGR*CGVRSGIRMEGAIGSP-GGFPTYPGAPDP----QPTYTEPPFSQTAG 734
           P + HGR  G R      G  G P GG P +P   DP     P  + PP +  +G
Sbjct: 201 PDMMHGRGMGKRFPPGRPGGPGMPPGGPPPFPPTSDPNMGHHPPISGPPTTSMSG 255


>SB_25089| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 505

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 648 GSPGGFPTYPGAPDPQPTYTEPPFSQTA 731
           G PG  P +PG   P+P    PPF+ TA
Sbjct: 27  GLPG--PGFPGTTKPRPKDRNPPFALTA 52


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,470,559
Number of Sequences: 59808
Number of extensions: 632460
Number of successful extensions: 2020
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2010
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)