Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1616
         (832 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    29   0.040
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    29   0.040
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              23   4.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   8.0  

>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 0.040
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 391 PSLDRGHLLKEIFPDNKSHGGNECNDR 311
           P  + G  LK+I PD  S G N+CN++
Sbjct: 52  PCTNEGRELKKILPDALSTGCNKCNEK 78


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 29.5 bits (63), Expect = 0.040
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 391 PSLDRGHLLKEIFPDNKSHGGNECNDR 311
           P  + G  LK+I PD  S G N+CN++
Sbjct: 52  PCTNEGRELKKILPDALSTGCNKCNEK 78


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +3

Query: 612 GVRSGIRMEGAIGSPGGFPTYPGAPDPQPTYTEPP--FSQTAGNT-GNMDYTAL 764
           GV  G   + A       P+YPG     P+ + P   FS  +  + G+ +YT +
Sbjct: 63  GVELGWFNDSAAAITSTSPSYPGGGSSSPSPSSPSSFFSSVSPTSLGSENYTGI 116


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 257  PPIRVSTPALG*YAAHYNHAEQPTYRPDDHMRPLNKSLRVKRASSFSTPIRT--GSI 93
            PP+ + TP+ G     +   EQ +   +++   +NK    KR +S +T ++   GSI
Sbjct: 846  PPV-IGTPSTGMMYKPFLIPEQTSISHENNQPTMNKCSDRKRPASQATSVKAEPGSI 901


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 454 ILLFVQCLGQN*EATDRNAN 513
           +LLF++C  +     D NAN
Sbjct: 59  VLLFIECTMKKFNVVDENAN 78


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 176  DDHMRPLNKSLRVKRASSFSTPIRT 102
            +DH RPL++ +     S +ST  RT
Sbjct: 1324 EDHRRPLSEHIYSSIDSDYSTLERT 1348


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 678 GAPDPQPTYTEPPFSQTAGNTGN 746
           GAP PQP+  + P +   G+  N
Sbjct: 19  GAPGPQPSPHQSPQAPQRGSPPN 41


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,533
Number of Sequences: 438
Number of extensions: 5608
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26581563
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)