Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1616
(832 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g15480.1 68416.m01963 expressed protein 35 0.076
At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid t... 31 0.94
At4g27435.1 68417.m03943 expressed protein 30 1.6
At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid t... 30 2.2
At2g33205.1 68415.m04068 TMS membrane family protein / tumour di... 29 2.9
At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid t... 28 6.6
At3g05210.1 68416.m00568 nucleotide repair protein, putative sim... 28 6.6
At2g03060.1 68415.m00259 MADS-box family protein 28 6.6
At5g58150.1 68418.m07278 leucine-rich repeat transmembrane prote... 28 8.7
At5g48040.1 68418.m05936 hypothetical protein 28 8.7
At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domai... 28 8.7
At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family... 24 9.5
>At3g15480.1 68416.m01963 expressed protein
Length = 175
Score = 34.7 bits (76), Expect = 0.076
Identities = 20/71 (28%), Positives = 29/71 (40%)
Frame = +2
Query: 257 DHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWA 436
D+CVY D A +YG G V+ F++ V + F S+ A + F W
Sbjct: 42 DYCVYGTDI-ATSYGAGAFVLLFVSQVLIMAASRCFCCGKSLNPGGSRACAIILFLICWV 100
Query: 437 FLYFVGFCYLS 469
F C L+
Sbjct: 101 FFLIAEMCLLA 111
>At4g12500.1 68417.m01975 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 177
Score = 31.1 bits (67), Expect = 0.94
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 666 PTYPGAPDPQPTYTEPPFSQTAGNTGNMDYTALRI 770
PT P P P PT PP +T G++GN ALR+
Sbjct: 70 PT-PSVPSPNPTPVTPP--RTPGSSGNCPIDALRL 101
>At4g27435.1 68417.m03943 expressed protein
Length = 173
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 257 DHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHYVLADLGFSAFWA 436
++CVY+ D A YGVG + + + + ++ F +K LA + F W
Sbjct: 42 NYCVYDSD-RATGYGVGAFLFSVASQILIMLVSRCFCCGKPLKPGGSRALALILFIVSWM 100
Query: 437 FLYFVGFCYLSNA 475
F C L+ +
Sbjct: 101 FFLIAEICLLAGS 113
>At4g12490.1 68417.m01974 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to pEARLI
1 (Accession No. L43080): an Arabidopsis member of a
conserved gene family (PGF95-099), Plant Physiol. 109
(4), 1497 (1995); contains Pfam protease inhibitor/seed
storage/LTP family domain PF00234
Length = 182
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 675 PGAPDPQPTYTEPPFSQTAGNTGNMDYTALRI 770
P P P PT PP +T G++GN ALR+
Sbjct: 77 PSVPSPNPTPVIPP--RTPGSSGNCPIDALRL 106
>At2g33205.1 68415.m04068 TMS membrane family protein / tumour
differentially expressed (TDE) family protein contains
Pfam domain, PF03348: TMS membrane protein/tumour
differentially expressed protein (TDE)
Length = 421
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +2
Query: 212 GLHIIQGLAY*L*WEDHCV-YNDDTNACNYGVGISVIAFIASVAFIVGEYLF 364
GL ++ + + W ++ + N +C++G+ +S++ +I SV I Y F
Sbjct: 168 GLQLVSVIEFITWWNNYWMPQNQSKQSCSFGLVMSIVFYIGSVCGIAVMYYF 219
>At4g12480.1 68417.m01973 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein identical to
pEARLI 1 (Accession No. L43080): an Arabidopsis member
of a conserved gene family (PGF95-099), Plant Physiol.
109 (4), 1497 (1995); contains Pfam protease
inhibitor/seed storage/LTP family domain PF00234
Length = 168
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 675 PGAPDPQPTYTEPPFSQTAGNTGNMDYTALRI 770
P P P P PP +T G++GN ALR+
Sbjct: 63 PSVPSPNPRPVTPP--RTPGSSGNCPIDALRL 92
>At3g05210.1 68416.m00568 nucleotide repair protein, putative
similar to nucleotide repair protein [Lilium
longiflorum] GI:3297891, SP|P07992 DNA excision repair
protein ERCC-1 {Homo sapiens}; contains Pfam profile
PF00633: Helix-hairpin-helix motif
Length = 410
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 131 ASSFSTPIRTGSIHFSTPQLDNLIVI 54
ASS STP+ TGS+ +T Q N I++
Sbjct: 103 ASSSSTPVATGSVPSNTTQNRNAILV 128
>At2g03060.1 68415.m00259 MADS-box family protein
Length = 337
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +2
Query: 257 DHCVYNDDTNACNYGVGISVIAFIASVAFIVGEYLFEQMSSVKTRKHY 400
D YND+TN +G S + S + EYLF Q++ K + +
Sbjct: 293 DSSAYNDNTNQTRFGSSSSSLPCSIS---MFDEYLFSQVTKTKLSQRF 337
>At5g58150.1 68418.m07278 leucine-rich repeat transmembrane protein
kinase, putative
Length = 785
Score = 27.9 bits (59), Expect = 8.7
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +2
Query: 614 RSLRHTNGGRDRKPWRLSH-LPRG-SRPAAYLH 706
+SL H NG D PWRL H + G +R A+LH
Sbjct: 603 QSLLHNNGD-DSAPWRLRHKIALGTARALAFLH 634
>At5g48040.1 68418.m05936 hypothetical protein
Length = 422
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 11 VKLYWVIDARLTALVSQSSYLIAVC 85
VKL WV D L A+V + +L AVC
Sbjct: 35 VKLKWVKDRELDAVVVREKHLRAVC 59
>At3g24190.1 68416.m03036 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 793
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +3
Query: 681 APDPQPTYTEPPFSQTAGNTGNMDYTALRINRRV 782
A DP+PT T PP S T + + + +N V
Sbjct: 44 ATDPKPTQTSPPKSTTVNGSSSPSSASKVVNNNV 77
>At3g22440.1 68416.m02836 hydroxyproline-rich glycoprotein family
protein identical to hydroxyproline-rich glycoprotein
[Arabidopsis thaliana] gi|9293881|dbj|BAB01784
Length = 532
Score = 24.2 bits (50), Expect(2) = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 291 HAFVSSL-YTQWSSHQSQYASPWMICSPLQSR*TANIPP 178
+A+VSS + + SH QYASP SP + + PP
Sbjct: 439 NAYVSSFPFIRSPSHSPQYASPAAYPSPPTTVYSNRSPP 477
Score = 21.8 bits (44), Expect(2) = 9.5
Identities = 6/14 (42%), Positives = 10/14 (71%)
Frame = -2
Query: 123 LFHPHTHRKYPF*H 82
++HPH H+ + F H
Sbjct: 514 VYHPHHHQHHQFHH 527
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,862,160
Number of Sequences: 28952
Number of extensions: 431094
Number of successful extensions: 1443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1437
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1911862400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -