BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1615X (401 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 30 0.12 SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 27 1.1 SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk... 26 2.5 SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ... 25 3.3 SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 4.4 SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c... 25 5.8 SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch... 24 7.7 >SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizosaccharomyces pombe|chr 3|||Manual Length = 979 Score = 30.3 bits (65), Expect = 0.12 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%) Frame = +3 Query: 171 ASEVVNF-DESG*LLQIAWSSTGDASFKCCLINFRW*F---LRLPWLSRVTGNQGSIPER 338 + E+++F ++S L+++ S+ +C +IN W LRL +L + NQ S E+ Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAEC-MINETWPVDRALRLQFLIQQRNNQSSNEEQ 301 Query: 339 EPEKRLP 359 + EKR+P Sbjct: 302 KQEKRVP 308 >SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schizosaccharomyces pombe|chr 1|||Manual Length = 267 Score = 27.1 bits (57), Expect = 1.1 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -2 Query: 280 NYHRKLIRQHLKDASPVLDHAICKSYPD 197 +YH K IR L ++ P IC+ Y D Sbjct: 213 SYHYKCIRPTLNESHPYFSCFICRKYHD 240 >SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 306 Score = 25.8 bits (54), Expect = 2.5 Identities = 13/33 (39%), Positives = 17/33 (51%) Frame = -1 Query: 368 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 270 P MW P N+ + YP +PW S+ LPS Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267 >SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces pombe|chr 2|||Manual Length = 504 Score = 25.4 bits (53), Expect = 3.3 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = -3 Query: 366 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 265 L ++ S+ P + PD P T+ V+ TT+E+ Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455 >SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 338 Score = 25.0 bits (52), Expect = 4.4 Identities = 11/35 (31%), Positives = 22/35 (62%) Frame = +2 Query: 20 NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 124 N IY+ +F ++S++ + + I L +RT++SD Sbjct: 14 NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48 >SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 300 Score = 24.6 bits (51), Expect = 5.8 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%) Frame = -2 Query: 283 RNYHR--KLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SN 140 ++Y R L+R+HL D + H +C+ P +TT PS+ F S+ Sbjct: 213 KSYQRFATLLRRHLLDKTAKRYHDLCEKRP-YKYITTDLLSPSLTCFASD 261 >SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 469 Score = 24.2 bits (50), Expect = 7.7 Identities = 12/29 (41%), Positives = 16/29 (55%) Frame = -2 Query: 253 HLKDASPVLDHAICKSYPDSSKLTTSDAR 167 HL+D S H++ KS + L TSD R Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,683,367 Number of Sequences: 5004 Number of extensions: 31754 Number of successful extensions: 77 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 74 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 77 length of database: 2,362,478 effective HSP length: 66 effective length of database: 2,032,214 effective search space used: 136158338 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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