Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1615X
         (401 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    30   0.12 
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi...    27   1.1  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    26   2.5  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    25   3.3  
SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   4.4  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   5.8  
SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|ch...    24   7.7  

>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 30.3 bits (65), Expect = 0.12
 Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
 Frame = +3

Query: 171 ASEVVNF-DESG*LLQIAWSSTGDASFKCCLINFRW*F---LRLPWLSRVTGNQGSIPER 338
           + E+++F ++S  L+++   S+     +C +IN  W     LRL +L +   NQ S  E+
Sbjct: 243 SKEIIDFLEKSKTLVELGMDSSCSLVAEC-MINETWPVDRALRLQFLIQQRNNQSSNEEQ 301

Query: 339 EPEKRLP 359
           + EKR+P
Sbjct: 302 KQEKRVP 308


>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
           Dma1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 280 NYHRKLIRQHLKDASPVLDHAICKSYPD 197
           +YH K IR  L ++ P     IC+ Y D
Sbjct: 213 SYHYKCIRPTLNESHPYFSCFICRKYHD 240


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 368 PWMW*PFLRLPLRNRTLIPRYP*QPW*SQKLPS 270
           P MW      P  N+ +   YP +PW S+ LPS
Sbjct: 236 PSMWPELSTFPDWNKFIFHEYPPKPW-SEILPS 267


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.4 bits (53), Expect = 3.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 366 LDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 265
           L ++  S+   P + PD P   T+  V+ TT+E+
Sbjct: 422 LGLINTSEINQPANLPDEPTAETSNPVSATTVEA 455


>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 20  NGSIYQFWFLRSYSVTWITVVILELIHAIRTLTSD 124
           N  IY+ +F  ++S++ + + I  L   +RT++SD
Sbjct: 14  NTQIYRIFFTLTFSLSNLFLAICYLFLNVRTVSSD 48


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 283 RNYHR--KLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SN 140
           ++Y R   L+R+HL D +    H +C+  P    +TT    PS+  F S+
Sbjct: 213 KSYQRFATLLRRHLLDKTAKRYHDLCEKRP-YKYITTDLLSPSLTCFASD 261


>SPAC23H3.14 |||LAlv9 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 253 HLKDASPVLDHAICKSYPDSSKLTTSDAR 167
           HL+D S    H++ KS    + L TSD R
Sbjct: 211 HLQDVSSPSAHSLEKSLHKPASLQTSDKR 239


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,367
Number of Sequences: 5004
Number of extensions: 31754
Number of successful extensions: 77
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)