Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1615X
         (401 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_1002 + 10171942-10172859,10173369-10173452                       27   4.2  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   4.2  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   5.6  
01_06_1128 - 34724469-34724699,34726103-34726213,34726301-347264...    27   7.3  
09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827           26   9.7  
04_04_0895 - 29168107-29168229,29168617-29170068                       26   9.7  

>08_01_1002 + 10171942-10172859,10173369-10173452
          Length = 333

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +1

Query: 163 RASRPKSLILMN--LDNFCRSHGQVPATHLSNVALSTFDGS 279
           RA +  SL L    +DN CR  G++P  + +N+++  F G+
Sbjct: 242 RAPKLHSLTLWTPAVDNGCRVAGELPLLNAANISVDAFLGT 282


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 372 PSLDVVAVSQAPSPESNPDSPLP 304
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +1

Query: 94  NTCNQNSDQ*WDECFY*IKTNRRR 165
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


>01_06_1128 -
           34724469-34724699,34726103-34726213,34726301-34726409,
           34726517-34726581,34726661-34726838,34726918-34726997,
           34727838-34727961,34728064-34728172,34728299-34728461
          Length = 389

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 44  FLRSYSVTWITVVILELIHAIRTLTSDGMSAF 139
           F+R Y  TW  +   +L+  + TLT    S F
Sbjct: 241 FIRCYDCTWTLIDEYDLVDPVHTLTPPEESGF 272


>09_02_0388 - 8450728-8450836,8451114-8451229,8451618-8451827
          Length = 144

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 372 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAET 277
           PS    A + + SP   PD PLP+ +M+ + T
Sbjct: 7   PSAAAAAATSSSSPRP-PDRPLPICSMLASYT 37


>04_04_0895 - 29168107-29168229,29168617-29170068
          Length = 524

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -2

Query: 379 PAAFLGCGSRFSGSLSGIEP*FPVTRDNHGSRRNYHRKLIRQHLKDASPVLDHAICKSYP 200
           PA +    +R + +L G +    VTR     R N  R   R ++ D    LDH +    P
Sbjct: 420 PAVYYLSSARRAAALRGGDT--TVTRYERWRRANETRPACRWNIADPDAHLDHIVVLKKP 477

Query: 199 D 197
           D
Sbjct: 478 D 478


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,263,355
Number of Sequences: 37544
Number of extensions: 223596
Number of successful extensions: 709
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 694697784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)