Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1615X
         (401 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)              47   7e-06
SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   3e-04
SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.022
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)                      31   0.46 
SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)                28   3.3  
SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_39423| Best HMM Match : IncA (HMM E-Value=0.55)                     27   5.7  
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.7  
SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)                    27   7.6  
SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  
SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   10.0 
SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)                 26   10.0 
SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)                   26   10.0 
SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)                 26   10.0 
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         26   10.0 

>SB_59794| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 128

 Score = 46.8 bits (106), Expect = 7e-06
 Identities = 21/24 (87%), Positives = 22/24 (91%)
 Frame = -3

Query: 363 DVVAVSQAPSPESNPDSPLPVTTM 292
           DVVAVSQAPSPESNP+SP PV TM
Sbjct: 105 DVVAVSQAPSPESNPNSPSPVVTM 128


>SB_25244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 41.1 bits (92), Expect = 3e-04
 Identities = 18/21 (85%), Positives = 19/21 (90%)
 Frame = -3

Query: 354 AVSQAPSPESNPDSPLPVTTM 292
           AVSQAPSPESNP+SP PV TM
Sbjct: 52  AVSQAPSPESNPNSPSPVVTM 72


>SB_34518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 35.1 bits (77), Expect = 0.022
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = -1

Query: 353 PFLRLPLRNRTLIPRYP 303
           PFLRLPLRNRTLI R+P
Sbjct: 224 PFLRLPLRNRTLILRHP 240


>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
          Length = 607

 Score = 30.7 bits (66), Expect = 0.46
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = -2

Query: 271 RKLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNKSTHPITGQSSDCMY 95
           ++ +R  LK AS   + +     PD++K TT  +  S     S  STH    +SS   Y
Sbjct: 119 KRFVRNRLKPASSRQEDSAKSIVPDNNKSTTVSSCKSTTAVNSRTSTHSAGSKSSSAAY 177


>SB_42465| Best HMM Match : 2-oxoacid_dh (HMM E-Value=0)
          Length = 441

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -3

Query: 372 PSLDVVAVSQAPSPESNPDSPLP 304
           P+ DV+A  Q P P S  D PLP
Sbjct: 75  PAEDVMAAHQEPKPTSAIDQPLP 97


>SB_48654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 92

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 312 GNQGSIPEREPEKRLPHPRKAA 377
           GN+GS  + E EK LP P K A
Sbjct: 52  GNEGSEGDGEKEKMLPSPEKKA 73


>SB_39423| Best HMM Match : IncA (HMM E-Value=0.55)
          Length = 425

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 304 RDNHGSRRNYHRKLIRQHLKDASPVLDHAI 215
           RD+HG R ++  K +R  + D   VLD+ I
Sbjct: 204 RDDHGRRVDFKGKPVRLKICDTQAVLDNEI 233


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 200  WITFADRMVKYRRRIFQM 253
            W TF DR +KY R +F++
Sbjct: 1014 WFTFKDRQLKYYRGVFKV 1031


>SB_45941| Best HMM Match : DUF632 (HMM E-Value=2.8)
          Length = 688

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 202 PDSSKLTTSDARPSVDWF*SNKSTHPITGQS 110
           PDS+ L   D   S +WF  N S  P TG +
Sbjct: 627 PDSAHLRREDTSKSAEWF--NMSFEPETGSN 655


>SB_32722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = -3

Query: 372 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 271
           P   ++     P P++ P  P P TTM    TTI
Sbjct: 438 PPPSIIPPPTTPLPQTVPTPPRPPTTMTTILTTI 471


>SB_55930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 643

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 252 CCLINFRW*FLRLPWLSRVTGNQGSIPEREPE 347
           C  +   W F    + SR+T N G IP++E E
Sbjct: 238 CGTLCILWSFWLFGFPSRITRNGGDIPDKEME 269


>SB_25694| Best HMM Match : RVT_1 (HMM E-Value=1.9e-22)
          Length = 1797

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  KYREWLNISVLVP*ILLSYLDNCGNS 87
           KY  W+N+ +LV    L ++  CG+S
Sbjct: 466 KYGRWVNVQMLVEEPELHFIAKCGSS 491


>SB_10819| Best HMM Match : DCX (HMM E-Value=6.3e-19)
          Length = 1199

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 12/51 (23%), Positives = 23/51 (45%)
 Frame = -2

Query: 304 RDNHGSRRNYHRKLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDW 152
           RD  G +++   ++  + L   SP  +  +     D    +  DA+P +DW
Sbjct: 357 RDQQGDKQSITVRVKGKKLTYYSPTNNDRLTVDEDDDEAFSPPDAKPQLDW 407


>SB_15796| Best HMM Match : RVT_1 (HMM E-Value=0.00082)
          Length = 1304

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  KYREWLNISVLVP*ILLSYLDNCGNS 87
           KY  W+N+ +LV    L ++  CG+S
Sbjct: 885 KYGRWVNVQMLVEEPELHFIAKCGSS 910


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = -2

Query: 277  YHRKLIRQHLKDASPVLDHAICKSYPDSSKLTTSDARPSVDWF*SNKS 134
            Y  +    HLK   P +  A   S+ D  KLT  DARP   W+  N+S
Sbjct: 1078 YQGQACCDHLKPVDPAVRTAQECSFHD--KLT-EDARPLPSWYGDNES 1122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,615,870
Number of Sequences: 59808
Number of extensions: 244823
Number of successful extensions: 751
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 715479706
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)